Variant report

Variant	rs4886734
Chromosome Location	chr15:76010909-76010910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76008615..76011064-chr15:76015741..76018140,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ODF3L1-1	chr15:76010661-76011286	NONHSAT047359

Variant related genes	Relation type
ENSG00000182950	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12592417	1.00[JPT][hapmap]
rs1807013	1.00[JPT][hapmap]
rs4886459	0.86[CHD][hapmap];1.00[JPT][hapmap]
rs7167845	1.00[JPT][hapmap]
rs8032927	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
4	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
6	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
7	nsv904392	chr15:75930757-76039262	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
8	nsv904394	chr15:75948671-76039262	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv904396	chr15:75961518-76071105	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76005200-76013400	Weak transcription	Esophagus	oesophagus
2	chr15:76005600-76016000	Weak transcription	Aorta	Aorta
3	chr15:76006000-76013400	Weak transcription	Psoas Muscle	Psoas
4	chr15:76006400-76011000	Weak transcription	Ovary	ovary
5	chr15:76006400-76013200	Weak transcription	Fetal Intestine Large	intestine
6	chr15:76006400-76013400	Weak transcription	Fetal Heart	heart
7	chr15:76006400-76013600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:76006600-76011000	Enhancers	Fetal Muscle Leg	muscle
9	chr15:76006600-76013400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:76007400-76011000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr15:76007600-76011200	Enhancers	Fetal Stomach	stomach
12	chr15:76007800-76011200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:76007800-76011600	Enhancers	Placenta	Placenta
14	chr15:76008200-76011200	Enhancers	Fetal Muscle Trunk	muscle
15	chr15:76008200-76013200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr15:76008200-76013200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr15:76008200-76013200	Weak transcription	Spleen	Spleen
18	chr15:76008200-76013400	Weak transcription	Colonic Mucosa	Colon
19	chr15:76008200-76015200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr15:76008200-76016000	Weak transcription	Gastric	stomach
21	chr15:76008400-76013400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr15:76009000-76011400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:76009000-76011600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:76009200-76011600	Enhancers	Stomach Smooth Muscle	stomach
25	chr15:76009400-76011400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr15:76009400-76011600	Enhancers	NHLF	lung
27	chr15:76009400-76017600	Enhancers	Stomach Mucosa	stomach
28	chr15:76009600-76011400	Enhancers	Placenta Amnion	Placenta Amnion
29	chr15:76009800-76011200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr15:76009800-76011400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr15:76009800-76011400	Enhancers	Colon Smooth Muscle	Colon
32	chr15:76009800-76011400	Enhancers	HSMM	muscle
33	chr15:76009800-76011400	Enhancers	HSMMtube	muscle
34	chr15:76009800-76011600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:76010000-76011000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:76010000-76011200	Enhancers	Rectal Smooth Muscle	rectum
37	chr15:76010000-76011200	Enhancers	Osteobl	bone
38	chr15:76010000-76011600	Enhancers	NHDF-Ad	bronchial
39	chr15:76010000-76015600	Weak transcription	Left Ventricle	heart
40	chr15:76010200-76013000	Weak transcription	Liver	Liver
41	chr15:76010200-76013400	Weak transcription	Lung	lung
42	chr15:76010200-76015200	Weak transcription	Fetal Lung	lung
43	chr15:76010200-76015800	Weak transcription	Adipose Nuclei	Adipose
44	chr15:76010400-76013400	Weak transcription	Right Ventricle	heart
45	chr15:76010600-76011000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr15:76010600-76011200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr15:76010600-76011200	Enhancers	HMEC	breast
48	chr15:76010600-76011400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr15:76010600-76011400	Enhancers	NHEK	skin
50	chr15:76010800-76011000	Bivalent Enhancer	HUVEC	blood vessel

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