Variant report

Variant	rs4887164
Chromosome Location	chr15:74066833-74066834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74065767..74070891-chr15:74072493..74077043,5	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12440563	0.93[ASW][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.96[MEX][hapmap];0.95[ASN][1000 genomes]
rs2123208	0.98[ASN][1000 genomes]
rs28485305	0.83[AMR][1000 genomes]
rs28688071	0.94[ASN][1000 genomes]
rs3088341	0.81[AMR][1000 genomes]
rs3743098	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4243087	0.94[ASN][1000 genomes]
rs4887161	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7162423	0.85[ASW][hapmap];0.96[MEX][hapmap]
rs7171779	0.85[ASW][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7172656	0.85[ASW][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4887164	THAP10	cis	cerebellum	SCAN
rs4887164	ARIH1	cis	parietal	SCAN
rs4887164	SCAMP2	cis	parietal	SCAN
rs4887164	COMMD4	cis	cerebellum	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74053000-74067000	Weak transcription	Fetal Brain Male	brain
2	chr15:74060400-74067200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr15:74060800-74073000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr15:74061000-74076600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:74064200-74073200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:74064400-74067000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:74065200-74067000	Weak transcription	Esophagus	oesophagus
8	chr15:74065600-74067800	Enhancers	Left Ventricle	heart
9	chr15:74065800-74067600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:74066000-74067600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:74066000-74076400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:74066200-74067000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr15:74066200-74067800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:74066200-74067800	Enhancers	Brain Germinal Matrix	brain
15	chr15:74066400-74068000	Enhancers	Right Ventricle	heart
16	chr15:74066400-74073400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:74066600-74067000	Weak transcription	Aorta	Aorta
18	chr15:74066600-74067000	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr15:74066600-74067800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr15:74066600-74067800	Enhancers	Fetal Heart	heart
21	chr15:74066600-74080200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:74066800-74067200	Active TSS	Brain Anterior Caudate	brain
23	chr15:74066800-74067200	Weak transcription	Right Atrium	heart
24	chr15:74066800-74067200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
25	chr15:74066800-74067600	Enhancers	Brain Cingulate Gyrus	brain
26	chr15:74066800-74067600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr15:74066800-74067600	Enhancers	Hela-S3	cervix
28	chr15:74066800-74067600	Enhancers	HSMMtube	muscle
29	chr15:74066800-74067600	Enhancers	K562	blood
30	chr15:74066800-74067800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:74066800-74067800	Enhancers	Brain Hippocampus Middle	brain
32	chr15:74066800-74067800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:74066800-74068800	Enhancers	Psoas Muscle	Psoas

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