Variant report

Variant	rs28688071
Chromosome Location	chr15:74059399-74059400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12440563	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17187183	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2123208	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3743098	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4243087	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4887161	0.94[ASN][1000 genomes]
rs4887164	0.94[ASN][1000 genomes]
rs60833441	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7162423	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7171779	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7172656	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74053000-74067000	Weak transcription	Fetal Brain Male	brain
2	chr15:74057200-74060400	Weak transcription	Esophagus	oesophagus
3	chr15:74057200-74066000	Weak transcription	Right Atrium	heart
4	chr15:74057400-74066400	Weak transcription	Right Ventricle	heart
5	chr15:74058800-74061000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:74059000-74059400	Enhancers	Gastric	stomach
7	chr15:74059000-74061200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:74059200-74059800	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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