Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr15:74047847-74048878	SH-SY5Y	brain:	n/a	n/a
2	GATA2	chr15:74047779-74048881	SH-SY5Y	brain:	n/a	n/a
3	EP300	chr15:74047687-74048836	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74038183..74040978-chr15:74046386..74048785,2	MCF-7	breast:

Variant related genes	Relation type
C15orf59	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11072438	0.83[ASN][1000 genomes]
rs12440563	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12442096	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12913243	0.84[ASN][1000 genomes]
rs17187183	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2123208	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2127018	0.82[ASN][1000 genomes]
rs28485305	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs28505607	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs28581503	0.89[ASN][1000 genomes]
rs28594180	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs28655328	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs28688071	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs28709470	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3088341	0.82[ASN][1000 genomes]
rs4243087	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4886520	0.82[ASN][1000 genomes]
rs4887111	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4887161	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7162423	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7171779	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7172656	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74046000-74056200	Weak transcription	Right Atrium	heart
2	chr15:74046400-74050200	Weak transcription	Right Ventricle	heart
3	chr15:74046600-74052200	Weak transcription	Fetal Brain Male	brain
4	chr15:74046800-74050800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr15:74047400-74056200	Weak transcription	Esophagus	oesophagus
6	chr15:74047600-74051800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: