Variant report

Variant	rs28581503
Chromosome Location	chr15:74052323-74052324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12442096	0.86[ASN][1000 genomes]
rs17187183	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28485305	0.91[ASN][1000 genomes]
rs28594180	0.86[ASN][1000 genomes]
rs4243087	0.82[AMR][1000 genomes]
rs60833441	0.89[ASN][1000 genomes]
rs7162423	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7171779	0.83[AMR][1000 genomes]
rs7172656	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74046000-74056200	Weak transcription	Right Atrium	heart
2	chr15:74047400-74056200	Weak transcription	Esophagus	oesophagus
3	chr15:74049800-74057000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:74051200-74056200	Weak transcription	Left Ventricle	heart
5	chr15:74051800-74052600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:74051800-74052600	Bivalent Enhancer	Fetal Heart	heart
7	chr15:74052000-74056200	Weak transcription	Right Ventricle	heart
8	chr15:74052200-74053000	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links