Variant report

Variant	rs28594180
Chromosome Location	chr15:74032783-74032784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1038093	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11072438	0.88[ASN][1000 genomes]
rs12440563	0.81[AFR][1000 genomes]
rs12442096	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913243	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17187183	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2123208	0.86[AFR][1000 genomes]
rs2127018	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28485305	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs28505607	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28581503	0.86[ASN][1000 genomes]
rs28655328	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28709470	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4243087	0.82[AFR][1000 genomes]
rs4886520	0.87[ASN][1000 genomes]
rs4887111	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4887161	0.89[AFR][1000 genomes]
rs60833441	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7162423	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74015800-74033400	Weak transcription	Ovary	ovary
2	chr15:74021800-74033400	Weak transcription	Right Atrium	heart
3	chr15:74023600-74036400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:74025600-74035200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:74027000-74033400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:74029200-74033000	Weak transcription	Brain Anterior Caudate	brain
7	chr15:74029800-74033000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:74029800-74033200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:74030000-74039200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:74030200-74034800	Weak transcription	Brain Germinal Matrix	brain
11	chr15:74031200-74033600	Strong transcription	Fetal Stomach	stomach
12	chr15:74031200-74038600	Weak transcription	Fetal Lung	lung
13	chr15:74031400-74033000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:74031400-74035000	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr15:74031600-74033200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:74031600-74035000	Weak transcription	Esophagus	oesophagus
17	chr15:74031600-74035000	Strong transcription	Fetal Brain Female	brain
18	chr15:74031800-74035600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr15:74031800-74036400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:74032000-74034400	Weak transcription	Pancreas	Pancrea
21	chr15:74032400-74033000	Strong transcription	Right Ventricle	heart
22	chr15:74032400-74033400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:74032600-74032800	Flanking Active TSS	HepG2	liver
24	chr15:74032600-74033000	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:74032600-74033200	Enhancers	Liver	Liver
26	chr15:74032600-74034200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links