Variant report

Variant	rs4889327
Chromosome Location	chr16:81536652-81536653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81534254..81537068-chr16:81537419..81539023,2	MCF-7	breast:
2	chr16:81535925..81538349-chr16:81544676..81546698,2	MCF-7	breast:
3	chr16:81536056..81540431-chr16:81540581..81543691,4	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12920728	0.95[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12932649	0.85[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs2927311	0.95[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs2966090	0.90[CHB][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.80[ASN][1000 genomes]
rs2966091	0.86[ASN][1000 genomes]
rs35137323	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4889326	0.95[CEU][hapmap];0.90[CHB][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7193307	0.89[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs8057739	0.84[CHB][hapmap]
rs8182218	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1057791	chr16:81515036-81644651	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv542993	chr16:81515036-81644651	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv457576	chr16:81525637-81579433	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573360	chr16:81525637-81579433	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81506000-81546600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr16:81506600-81547000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr16:81522400-81537000	Enhancers	HUVEC	blood vessel
4	chr16:81525400-81554800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr16:81527400-81544000	Genic enhancers	A549	lung
6	chr16:81527800-81538400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr16:81527800-81546600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr16:81527800-81546600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr16:81528200-81547000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr16:81529000-81544000	Weak transcription	Hela-S3	cervix
11	chr16:81529000-81546800	Weak transcription	Dnd41	blood
12	chr16:81529200-81547000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr16:81530800-81537200	Enhancers	Adipose Nuclei	Adipose
14	chr16:81531200-81545800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr16:81532200-81538600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr16:81532400-81537000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr16:81532400-81539800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr16:81532400-81546800	Weak transcription	Gastric	stomach
19	chr16:81532600-81538600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr16:81532600-81539200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr16:81532800-81546600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr16:81533000-81537400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr16:81533000-81538400	Enhancers	K562	blood
24	chr16:81533000-81546600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr16:81533200-81546800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr16:81533600-81540800	Weak transcription	Brain Substantia Nigra	brain
27	chr16:81533600-81545400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr16:81533800-81536800	Weak transcription	Esophagus	oesophagus
29	chr16:81533800-81538400	Enhancers	NHEK	skin
30	chr16:81533800-81538600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr16:81533800-81538600	Weak transcription	Pancreas	Pancrea
32	chr16:81533800-81545800	Weak transcription	Liver	Liver
33	chr16:81533800-81547000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr16:81533800-81550000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr16:81534200-81536800	Enhancers	Brain Cingulate Gyrus	brain
36	chr16:81534800-81536800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr16:81534800-81537000	Weak transcription	Spleen	Spleen
38	chr16:81534800-81537200	Weak transcription	Fetal Thymus	thymus
39	chr16:81534800-81538400	Enhancers	GM12878-XiMat	blood
40	chr16:81534800-81538600	Weak transcription	HepG2	liver
41	chr16:81534800-81539000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr16:81534800-81539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr16:81534800-81541200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr16:81534800-81543600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr16:81534800-81546800	Weak transcription	Colonic Mucosa	Colon
46	chr16:81534800-81550000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr16:81535000-81538600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr16:81535000-81538600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr16:81535000-81540200	Enhancers	Primary B cells from peripheral blood	blood
50	chr16:81535000-81542800	Weak transcription	Primary T cells from cord blood	blood

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