Variant report

Variant	rs8182218
Chromosome Location	chr16:81547687-81547688
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81546606..81548288-chr16:81551427..81553768,2	K562	blood:
2	chr16:81515452..81518298-chr16:81547120..81549781,2	MCF-7	breast:
3	chr16:81547505..81549676-chr16:81576353..81579232,2	MCF-7	breast:
4	chr16:81523253..81525338-chr16:81546964..81549202,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12920728	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12932649	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs2927311	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs2966090	1.00[CHB][hapmap];0.81[GIH][hapmap]
rs2966091	0.82[ASN][1000 genomes]
rs35137323	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4889326	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs4889327	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7193307	1.00[CHB][hapmap]
rs7206497	0.88[YRI][hapmap]
rs8057739	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1057791	chr16:81515036-81644651	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv542993	chr16:81515036-81644651	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv457576	chr16:81525637-81579433	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573360	chr16:81525637-81579433	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1062659	chr16:81547280-81668786	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81525400-81554800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr16:81533800-81550000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr16:81534800-81550000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr16:81537000-81549400	Weak transcription	Fetal Brain Female	brain
5	chr16:81541400-81551400	Enhancers	HUVEC	blood vessel
6	chr16:81544200-81554400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr16:81544400-81548800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr16:81544600-81548400	Enhancers	NHDF-Ad	bronchial
9	chr16:81545200-81547800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr16:81545200-81548200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr16:81545200-81549200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr16:81545200-81549400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr16:81545200-81549600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr16:81545200-81550000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr16:81545200-81550200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr16:81545200-81553400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr16:81545400-81548000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr16:81545400-81548600	Enhancers	Primary hematopoietic stem cells	blood
19	chr16:81545400-81553000	Weak transcription	Hela-S3	cervix
20	chr16:81545600-81548000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr16:81545800-81548200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr16:81545800-81548600	Enhancers	Primary B cells from cord blood	blood
23	chr16:81545800-81548600	Enhancers	Primary B cells from peripheral blood	blood
24	chr16:81545800-81549600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr16:81546200-81547800	Weak transcription	HMEC	breast
26	chr16:81546400-81548200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr16:81546400-81548200	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr16:81546400-81548600	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr16:81546400-81548800	Enhancers	Stomach Mucosa	stomach
30	chr16:81546600-81547800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr16:81546600-81547800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr16:81546600-81547800	Enhancers	Brain Anterior Caudate	brain
33	chr16:81546600-81547800	Enhancers	Fetal Lung	lung
34	chr16:81546600-81547800	Enhancers	Fetal Thymus	thymus
35	chr16:81546600-81548000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr16:81546600-81548000	Enhancers	Brain Hippocampus Middle	brain
37	chr16:81546600-81548000	Enhancers	Brain Substantia Nigra	brain
38	chr16:81546600-81548000	Enhancers	Fetal Muscle Leg	muscle
39	chr16:81546600-81548200	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr16:81546600-81548200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr16:81546600-81548200	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr16:81546600-81548200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr16:81546600-81548200	Enhancers	Stomach Smooth Muscle	stomach
44	chr16:81546600-81548200	Enhancers	NH-A	brain
45	chr16:81546600-81548400	Enhancers	Fetal Heart	heart
46	chr16:81546600-81548400	Enhancers	Rectal Mucosa Donor 29	rectum
47	chr16:81546600-81548600	Enhancers	Fetal Muscle Trunk	muscle
48	chr16:81546600-81548800	Enhancers	Small Intestine	intestine
49	chr16:81546600-81549000	Enhancers	Brain Cingulate Gyrus	brain
50	chr16:81546600-81549000	Enhancers	Duodenum Mucosa	Duodenum

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