Variant report

Variant	rs4894009
Chromosome Location	chr2:179182109-179182110
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:179174805..179177159-chr2:179180996..179182677,2	MCF-7	breast:
2	chr2:179182101..179184343-chr2:179194524..179196984,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12151447	0.82[EUR][1000 genomes]
rs12464380	0.81[CEU][hapmap]
rs12464806	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12467040	0.80[AMR][1000 genomes]
rs12473890	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12474919	0.81[EUR][1000 genomes]
rs12478760	0.82[EUR][1000 genomes]
rs12478837	0.81[CEU][hapmap];0.80[AMR][1000 genomes]
rs13402976	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1434082	0.82[EUR][1000 genomes]
rs1434083	0.82[EUR][1000 genomes]
rs16866272	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4893850	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4894008	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4894012	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4894013	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62176069	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62176070	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62176071	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62176072	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62176076	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62176078	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6718010	0.80[AMR][1000 genomes]
rs6760059	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73032523	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73032568	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7349264	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7559125	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7559527	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7570485	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7576065	0.81[CEU][hapmap];0.80[AMR][1000 genomes]
rs7576231	0.81[CEU][hapmap];0.80[AMR][1000 genomes]
rs7587155	0.81[CEU][hapmap]
rs7599195	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9646740	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv834466	chr2:179140792-179284778	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv3402547	chr2:179181256-179183354	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179143200-179188600	Weak transcription	Brain Anterior Caudate	brain
2	chr2:179160200-179188600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:179164600-179200800	Weak transcription	Aorta	Aorta
4	chr2:179176200-179198000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr2:179176400-179183400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:179180400-179183200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr2:179180600-179183400	Weak transcription	Psoas Muscle	Psoas
8	chr2:179180600-179183600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:179180600-179184000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr2:179180800-179182800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr2:179180800-179184400	Weak transcription	Liver	Liver
12	chr2:179181000-179188600	Weak transcription	K562	blood

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