Variant report

Variant	rs62176070
Chromosome Location	chr2:179168601-179168602
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:179167816..179170887-chr2:179172364..179174355,4	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10167889	0.87[EUR][1000 genomes]
rs12464806	0.87[AMR][1000 genomes]
rs12467040	0.82[AMR][1000 genomes]
rs12467696	0.87[EUR][1000 genomes]
rs12473890	0.87[AMR][1000 genomes]
rs12478837	0.82[AMR][1000 genomes]
rs13402976	0.82[AMR][1000 genomes]
rs16866272	0.84[AMR][1000 genomes]
rs1992753	0.87[EUR][1000 genomes]
rs334599	0.83[AMR][1000 genomes]
rs334611	0.80[EUR][1000 genomes]
rs334613	0.80[EUR][1000 genomes]
rs4893850	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4894006	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4894008	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4894009	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4894012	0.81[AMR][1000 genomes]
rs4894013	0.81[AMR][1000 genomes]
rs62176069	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62176071	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62176072	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62176076	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62176078	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62177256	0.85[EUR][1000 genomes]
rs62177257	0.87[EUR][1000 genomes]
rs62179162	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62179163	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62179164	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62179167	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6718010	0.82[AMR][1000 genomes]
rs6760059	0.85[AMR][1000 genomes]
rs73032523	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73032568	0.82[AMR][1000 genomes]
rs7349264	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7559125	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7559527	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7570485	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7576065	0.82[AMR][1000 genomes]
rs7576231	0.82[AMR][1000 genomes]
rs7599195	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9646740	0.83[AMR][1000 genomes]
rs9808049	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv834466	chr2:179140792-179284778	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179143200-179188600	Weak transcription	Brain Anterior Caudate	brain
2	chr2:179155600-179174200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:179160200-179188600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:179161600-179173600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:179162000-179174200	Weak transcription	Adipose Nuclei	Adipose
6	chr2:179162400-179179800	Weak transcription	Liver	Liver
7	chr2:179163800-179174200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:179164000-179173400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:179164200-179169400	Weak transcription	NHEK	skin
10	chr2:179164200-179180400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr2:179164600-179173800	Weak transcription	HMEC	breast
12	chr2:179164600-179200800	Weak transcription	Aorta	Aorta
13	chr2:179164800-179168800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr2:179164800-179168800	Weak transcription	K562	blood
15	chr2:179165200-179173600	Weak transcription	Esophagus	oesophagus
16	chr2:179165200-179177800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr2:179165400-179174800	Weak transcription	Gastric	stomach
18	chr2:179166800-179170800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr2:179166800-179179400	Weak transcription	Psoas Muscle	Psoas
20	chr2:179167000-179179400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr2:179167000-179179400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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