Variant report

Variant	rs4894109
Chromosome Location	chr2:180439541-180439542
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10497542	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs13012946	0.83[JPT][hapmap]
rs1356069	0.85[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs1515306	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1515310	0.83[CHD][hapmap];0.83[ASN][1000 genomes]
rs3106713	0.84[CHD][hapmap]
rs3106714	0.85[CHB][hapmap];0.91[CHD][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521639	chr2:180439541-180443444	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180433000-180440800	Weak transcription	Gastric	stomach
2	chr2:180433000-180445600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:180435400-180446400	Weak transcription	Fetal Kidney	kidney
5	chr2:180437600-180445200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:180438400-180439800	Flanking Active TSS	Liver	Liver
7	chr2:180438600-180439800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:180438600-180439800	Enhancers	Osteobl	bone
9	chr2:180438800-180439600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:180438800-180439600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr2:180438800-180439800	Enhancers	Fetal Lung	lung
12	chr2:180439000-180441000	Enhancers	HepG2	liver
13	chr2:180439200-180439600	Weak transcription	Fetal Intestine Large	intestine
14	chr2:180439400-180443200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:180439400-180445000	Weak transcription	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links