Variant report

Variant	rs4894838
Chromosome Location	chr3:105515855-105515856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1025885	0.85[AFR][1000 genomes]
rs10933831	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10933832	0.85[AFR][1000 genomes]
rs12635805	0.85[AFR][1000 genomes]
rs1561920	0.85[AFR][1000 genomes]
rs2083759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2120102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6805675	0.85[AFR][1000 genomes]
rs769317	0.98[AFR][1000 genomes]
rs9866153	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877309	chr3:105373836-105542435	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105482800-105517400	Weak transcription	Fetal Intestine Large	intestine
2	chr3:105483200-105555200	Weak transcription	Placenta	Placenta
3	chr3:105486800-105519000	Weak transcription	Esophagus	oesophagus
4	chr3:105489600-105525400	Weak transcription	Fetal Intestine Small	intestine
5	chr3:105494400-105516200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:105495400-105517200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:105501800-105516600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr3:105505000-105527800	Weak transcription	Pancreas	Pancrea
9	chr3:105505000-105548200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:105505600-105517400	Weak transcription	Brain Substantia Nigra	brain
11	chr3:105506200-105516000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:105506600-105518200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:105509800-105527800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr3:105510000-105517400	Weak transcription	Stomach Mucosa	stomach
15	chr3:105510200-105516400	Weak transcription	Primary T cells from cord blood	blood
16	chr3:105510600-105521200	Weak transcription	Fetal Brain Male	brain
17	chr3:105511400-105566400	Weak transcription	Aorta	Aorta
18	chr3:105511600-105516600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr3:105511600-105516800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr3:105511800-105520400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:105512000-105516800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:105512000-105516800	Weak transcription	NH-A	brain
23	chr3:105512000-105520600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr3:105512200-105516200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:105512200-105516200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr3:105512200-105516600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr3:105512200-105517200	Weak transcription	Fetal Lung	lung
28	chr3:105512200-105517400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:105512200-105517400	Weak transcription	Fetal Heart	heart
30	chr3:105512200-105517400	Weak transcription	Ovary	ovary
31	chr3:105512200-105517400	Weak transcription	Small Intestine	intestine
32	chr3:105512200-105519000	Weak transcription	Psoas Muscle	Psoas
33	chr3:105512200-105519000	Weak transcription	Right Atrium	heart
34	chr3:105512200-105519200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr3:105512200-105520200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:105512200-105520400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr3:105512200-105527200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr3:105512200-105534200	Weak transcription	Left Ventricle	heart
39	chr3:105512400-105524400	Weak transcription	NHLF	lung
40	chr3:105512600-105516800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr3:105512600-105518200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr3:105512600-105520400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr3:105512600-105524000	Weak transcription	HSMMtube	muscle
44	chr3:105512600-105524600	Weak transcription	Colon Smooth Muscle	Colon
45	chr3:105512600-105525200	Weak transcription	HSMM	muscle
46	chr3:105512800-105517400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr3:105512800-105517400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr3:105512800-105517400	Weak transcription	A549	lung
49	chr3:105513000-105516400	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr3:105513400-105516000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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