Variant report

Variant	rs4894924
Chromosome Location	chr3:105113237-105113238
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1036581	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12488994	0.82[CHD][hapmap]
rs13100098	0.82[CHD][hapmap]
rs1438538	0.82[CHD][hapmap]
rs2033802	0.88[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.80[LWK][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2053307	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6767277	0.82[CHD][hapmap]
rs6769302	0.82[CHD][hapmap]
rs6779807	0.82[CHD][hapmap]
rs6790159	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7428824	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7431531	0.82[CHD][hapmap]
rs7641185	0.82[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7644273	0.88[CHD][hapmap]
rs9288803	0.88[ASW][hapmap];0.80[LWK][hapmap];0.86[YRI][hapmap]
rs9827147	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9827196	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9864062	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9870921	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv829650	chr3:105070893-105255036	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105105000-105116800	Weak transcription	Aorta	Aorta
2	chr3:105107000-105116800	Weak transcription	Osteobl	bone
3	chr3:105107000-105119400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:105108000-105118600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:105110800-105120000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:105112400-105113800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:105112600-105113800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:105112800-105113400	Enhancers	NH-A	brain
9	chr3:105112800-105113600	Flanking Active TSS	HUVEC	blood vessel
10	chr3:105112800-105113800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:105112800-105114000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:105112800-105114000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr3:105113000-105113400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr3:105113000-105113400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:105113000-105113400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr3:105113000-105113400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:105113000-105113400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:105113000-105113400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:105113000-105113800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr3:105113000-105113800	Enhancers	A549	lung
21	chr3:105113000-105114000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr3:105113000-105114600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr3:105113200-105113400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:105113200-105113400	Enhancers	Brain Hippocampus Middle	brain
25	chr3:105113200-105113400	Enhancers	Brain Inferior Temporal Lobe	brain

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