Variant report

Variant	rs7431531
Chromosome Location	chr3:105198374-105198375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10049426	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1036582	1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1036583	0.86[CHB][hapmap];0.83[CHD][hapmap];0.90[GIH][hapmap];0.88[MEX][hapmap]
rs10511243	0.86[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs10933816	0.92[ASN][1000 genomes]
rs10933817	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12488994	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12491980	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12494392	0.86[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs12695118	0.84[ASN][1000 genomes]
rs13062366	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13064396	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13092811	0.92[ASN][1000 genomes]
rs13097669	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13100098	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1438538	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1438541	0.94[ASN][1000 genomes]
rs1530069	1.00[ASN][1000 genomes]
rs1898654	0.86[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs2033802	0.83[CHD][hapmap]
rs2164956	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2178407	0.93[CHD][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs2196745	0.86[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs2399045	0.90[ASN][1000 genomes]
rs28670976	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2895299	1.00[ASN][1000 genomes]
rs4426702	0.92[ASN][1000 genomes]
rs4894831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4894924	0.82[CHD][hapmap]
rs57834585	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62260776	0.88[AFR][1000 genomes]
rs62263606	0.81[AFR][1000 genomes]
rs6437587	0.85[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs6437589	0.86[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6764212	0.95[LWK][hapmap]
rs6767277	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6767814	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6769302	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6779807	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6780238	1.00[ASN][1000 genomes]
rs6796658	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6806304	0.81[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73189010	0.88[AFR][1000 genomes]
rs7615005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7621905	1.00[LWK][hapmap];1.00[MKK][hapmap];0.81[AFR][1000 genomes]
rs7629589	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7641185	0.88[CHD][hapmap]
rs7644273	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7647011	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7649033	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9288802	1.00[ASN][1000 genomes]
rs934856	1.00[ASN][1000 genomes]
rs975574	0.92[ASN][1000 genomes]
rs9842028	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9851952	0.82[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs9870921	0.94[CHD][hapmap]
rs9883620	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9883799	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv829650	chr3:105070893-105255036	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv877304	chr3:105122214-105198374	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv534224	chr3:105141696-105404293	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105191400-105200600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:105192600-105199400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:105193000-105209000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:105193000-105215400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:105193200-105199800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:105193200-105209400	Weak transcription	HSMM	muscle
7	chr3:105193200-105209400	Weak transcription	NH-A	brain
8	chr3:105193200-105213600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:105194000-105199000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:105197000-105199800	Weak transcription	Fetal Kidney	kidney
11	chr3:105197600-105199600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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