Variant report

Variant	rs6764212
Chromosome Location	chr3:105092918-105092919
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105085642..105088173-chr3:105091150..105094093,3	MCF-7	breast:
2	chr3:105085142..105089200-chr3:105089308..105093087,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170017	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1044240	0.82[MEX][hapmap]
rs2049217	1.00[JPT][hapmap];0.82[MEX][hapmap]
rs62260776	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62262154	0.90[AFR][1000 genomes]
rs62263560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62263605	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62263606	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62263608	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6437587	0.82[JPT][hapmap]
rs6437601	0.82[MEX][hapmap]
rs6778460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804574	0.94[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73189010	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7431531	0.95[LWK][hapmap]
rs7621905	0.94[CEU][hapmap];0.94[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9288802	0.94[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs9851952	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv829650	chr3:105070893-105255036	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105089000-105107000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:105089200-105093600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:105089200-105094000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:105089200-105095200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:105089200-105101800	Weak transcription	NHDF-Ad	bronchial
6	chr3:105089400-105094200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:105089600-105095000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:105089800-105093200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:105089800-105094000	Weak transcription	Dnd41	blood
10	chr3:105089800-105095000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:105090200-105096400	Weak transcription	A549	lung
12	chr3:105090600-105094000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:105090600-105101800	Weak transcription	Osteobl	bone
14	chr3:105090800-105094400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:105090800-105104800	Weak transcription	NHLF	lung
16	chr3:105091000-105093000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:105091000-105097600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:105091400-105105000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:105091600-105093600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr3:105091600-105095200	Weak transcription	Brain Angular Gyrus	brain
21	chr3:105091600-105095600	Weak transcription	HUVEC	blood vessel
22	chr3:105091600-105097400	Weak transcription	Brain Anterior Caudate	brain
23	chr3:105091600-105104000	Weak transcription	NH-A	brain
24	chr3:105091800-105104600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:105091800-105104800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:105092000-105097600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:105092000-105106000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:105092400-105096400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr3:105092600-105093000	Active TSS	GM12878-XiMat	blood
30	chr3:105092600-105094800	Weak transcription	Brain Substantia Nigra	brain
31	chr3:105092600-105095000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr3:105092800-105094800	Weak transcription	Brain Hippocampus Middle	brain
33	chr3:105092800-105100200	Weak transcription	NHEK	skin
34	chr3:105092800-105103600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:105092800-105104200	Weak transcription	HepG2	liver
36	chr3:105092800-105105200	Weak transcription	HMEC	breast

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