Variant report

Variant	rs489514
Chromosome Location	chr3:118144534-118144535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16828363	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs488628	0.93[ASN][1000 genomes]
rs492668	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs504005	0.95[ASN][1000 genomes]
rs513011	0.96[ASN][1000 genomes]
rs517313	0.96[ASN][1000 genomes]
rs518166	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs539284	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs540615	0.95[ASN][1000 genomes]
rs542459	0.95[ASN][1000 genomes]
rs553070	0.93[ASN][1000 genomes]
rs566459	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73180839	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73180840	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73180841	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118144000-118144600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:118144000-118144800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:118144200-118144800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:118144400-118144800	Active TSS	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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