Variant report

Variant	rs504005
Chromosome Location	chr3:118138143-118138144
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1083825	0.86[EUR][1000 genomes]
rs1614410	0.86[EUR][1000 genomes]
rs16828363	0.96[ASN][1000 genomes]
rs487147	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs488628	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs489514	0.95[ASN][1000 genomes]
rs492668	0.96[ASN][1000 genomes]
rs513011	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs517313	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs518166	0.93[ASN][1000 genomes]
rs539284	0.96[ASN][1000 genomes]
rs540615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs542459	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545252	0.85[EUR][1000 genomes]
rs553070	0.93[ASN][1000 genomes]
rs566459	0.96[ASN][1000 genomes]
rs73180839	0.90[ASN][1000 genomes]
rs73180840	0.90[ASN][1000 genomes]
rs73180841	0.90[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118129200-118139400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:118138000-118138400	ZNF genes & repeats	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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