Variant report

Variant	rs4895791
Chromosome Location	chr6:149807546-149807547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149806502..149808230-chr6:149808327..149810146,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2179368	0.94[CHB][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2789504	0.91[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs4897126	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4897127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv1832313	chr6:149789511-149840750	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149804400-149824600	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:149806400-149832000	Weak transcription	HSMMtube	muscle
3	chr6:149806400-149844800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:149806600-149810000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:149806800-149807600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr6:149806800-149808600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:149806800-149809800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:149806800-149809800	Weak transcription	Esophagus	oesophagus
9	chr6:149806800-149825200	Weak transcription	HSMM	muscle
10	chr6:149806800-149832400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:149807000-149807600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr6:149807000-149807600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr6:149807000-149807800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:149807000-149808000	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr6:149807000-149809800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:149807000-149809800	Weak transcription	Left Ventricle	heart
17	chr6:149807000-149811200	Weak transcription	Right Atrium	heart
18	chr6:149807000-149812200	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:149807000-149814000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:149807000-149814600	Weak transcription	Fetal Thymus	thymus
21	chr6:149807000-149832200	Weak transcription	Lung	lung
22	chr6:149807000-149849000	Weak transcription	Gastric	stomach
23	chr6:149807200-149807600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:149807200-149807600	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr6:149807200-149807600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr6:149807200-149807600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:149807200-149807600	Enhancers	HepG2	liver
28	chr6:149807200-149809800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr6:149807200-149810200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr6:149807200-149811200	Enhancers	GM12878-XiMat	blood
31	chr6:149807200-149811600	Enhancers	Primary B cells from cord blood	blood
32	chr6:149807200-149815600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:149807200-149824800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr6:149807200-149832000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:149807200-149835000	Weak transcription	Spleen	Spleen
36	chr6:149807200-149842600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:149807400-149809600	Weak transcription	Fetal Intestine Large	intestine
38	chr6:149807400-149809600	Weak transcription	Fetal Intestine Small	intestine
39	chr6:149807400-149809800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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