Variant report

Variant	rs2789504
Chromosome Location	chr6:149803182-149803183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2179368	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes]
rs4895791	0.91[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs4897126	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4897127	0.91[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1832313	chr6:149789511-149840750	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149789400-149806000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:149796600-149803400	Weak transcription	HepG2	liver
3	chr6:149799600-149803800	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
4	chr6:149800000-149806000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:149800400-149805800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:149800600-149803200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:149800800-149803600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:149801000-149804400	Flanking Active TSS	GM12878-XiMat	blood
9	chr6:149801200-149807000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr6:149801400-149805600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
11	chr6:149801600-149804200	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr6:149801600-149807200	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr6:149801800-149803200	Enhancers	Lung	lung
14	chr6:149801800-149803600	Active TSS	Colonic Mucosa	Colon
15	chr6:149802000-149803200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
16	chr6:149802000-149803600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:149802000-149804200	Active TSS	Rectal Smooth Muscle	rectum
18	chr6:149802000-149804400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr6:149802000-149805600	Flanking Active TSS	Primary B cells from peripheral blood	blood
20	chr6:149802200-149803400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:149802200-149805600	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr6:149802200-149806800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr6:149802400-149803600	Active TSS	Brain Hippocampus Middle	brain
24	chr6:149802400-149805000	Weak transcription	Small Intestine	intestine
25	chr6:149802600-149803600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:149802600-149804000	Active TSS	Stomach Smooth Muscle	stomach
27	chr6:149802600-149804200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
28	chr6:149802600-149804400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:149802800-149803200	Enhancers	Fetal Intestine Small	intestine
30	chr6:149802800-149803200	Flanking Active TSS	Spleen	Spleen
31	chr6:149802800-149803400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:149802800-149803400	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr6:149802800-149803600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:149802800-149803600	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr6:149802800-149803600	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr6:149802800-149803600	Active TSS	NHDF-Ad	bronchial
37	chr6:149802800-149803600	Active TSS	NHLF	lung
38	chr6:149802800-149803800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:149802800-149803800	Active TSS	Colon Smooth Muscle	Colon
40	chr6:149802800-149803800	Flanking Active TSS	Osteobl	bone
41	chr6:149802800-149804000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
42	chr6:149802800-149804200	Flanking Active TSS	Primary T cells from cord blood	blood
43	chr6:149802800-149804400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
44	chr6:149802800-149804400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:149802800-149804400	Flanking Active TSS	Thymus	Thymus
46	chr6:149802800-149804600	Flanking Active TSS	Primary hematopoietic stem cells	blood
47	chr6:149802800-149804800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:149802800-149805600	Enhancers	Fetal Lung	lung
49	chr6:149802800-149806400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:149802800-149806800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood

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