Variant report

Variant	rs4896663
Chromosome Location	chr6:143833126-143833127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr6:143832151-143833405	U2OS	brain:	n/a	n/a
2	HEY1	chr6:143832067-143833207	HepG2	liver:	n/a	n/a
3	MBD4	chr6:143831885-143833217	HepG2	liver:	n/a	n/a
4	REST	chr6:143832215-143833143	HepG2	liver:	n/a	chr6:143833023-143833032 chr6:143832452-143832462 chr6:143832821-143832828 chr6:143832856-143832869
5	MYBL2	chr6:143831999-143833174	HepG2	liver:	n/a	n/a
6	SIN3A	chr6:143832144-143833230	H1-hESC	embryonic stem cell:	n/a	chr6:143832452-143832461
7	POLR2A	chr6:143832076-143833323	K562	blood:	n/a	n/a
8	MAFK	chr6:143832068-143833175	K562	blood:	n/a	chr6:143832968-143832979 chr6:143832963-143832978
9	MYC	chr6:143831941-143833312	K562	blood:	n/a	chr6:143832807-143832817
10	NFIC	chr6:143832022-143833179	ECC-1	luminal epithelium:	n/a	n/a
11	MYBL2	chr6:143831886-143833332	HepG2	liver:	n/a	n/a
12	POLR2A	chr6:143832054-143833172	Hela-S3	cervix:	n/a	n/a
13	POLR2A	chr6:143832088-143833263	K562	blood:	n/a	n/a
14	IRF1	chr6:143832066-143833177	K562	blood:	n/a	chr6:143832067-143832076
15	POLR2A	chr6:143832084-143833202	K562	blood:	n/a	n/a
16	POLR2A	chr6:143832211-143833198	H1-hESC	embryonic stem cell:	n/a	n/a
17	UBTF	chr6:143832108-143833330	K562	blood:	n/a	n/a
18	ETS1	chr6:143832064-143833129	K562	blood:	n/a	chr6:143832395-143832404 chr6:143832892-143832905 chr6:143832395-143832406 chr6:143832396-143832406 chr6:143832395-143832404
19	TAF1	chr6:143832245-143833209	K562	blood:	n/a	n/a
20	POLR2A	chr6:143832294-143833268	GM18526	blood:	n/a	n/a
21	POLR2A	chr6:143832070-143833206	MCF10A-Er-Src	breast:	n/a	n/a
22	GTF2B	chr6:143832231-143833315	K562	blood:	n/a	n/a
23	YY1	chr6:143832348-143833288	K562	blood:	n/a	n/a
24	MAX	chr6:143832005-143833171	SK-N-SH	brain:	n/a	chr6:143832807-143832817
25	POLR2A	chr6:143832105-143833191	GM12878	blood:	n/a	n/a
26	POLR2A	chr6:143831939-143833246	K562	blood:	n/a	n/a
27	POLR2A	chr6:143832113-143833195	MCF-7	breast:	n/a	n/a
28	STAT5A	chr6:143832043-143833155	K562	blood:	n/a	chr6:143832371-143832379
29	POLR2A	chr6:143832052-143833269	GM18505	blood:	n/a	n/a
30	STAT1	chr6:143832151-143833132	GM12878	blood:	n/a	chr6:143832371-143832379
31	RCOR1	chr6:143831956-143833249	K562	blood:	n/a	n/a
32	MAFK	chr6:143832777-143833155	H1-hESC	embryonic stem cell:	n/a	chr6:143832968-143832979 chr6:143832963-143832978
33	HDAC2	chr6:143832110-143833126	MCF-7	breast:	n/a	n/a
34	GTF2F1	chr6:143832187-143833169	Hela-S3	cervix:	n/a	n/a
35	MAX	chr6:143832120-143833336	H1-hESC	embryonic stem cell:	n/a	chr6:143832807-143832817
36	POLR2A	chr6:143832081-143833313	K562	blood:	n/a	n/a
37	MAX	chr6:143831965-143833269	K562	blood:	n/a	chr6:143832807-143832817
38	POLR2A	chr6:143832263-143833136	HEK293	kidney:	n/a	n/a
39	MYC	chr6:143832070-143833226	K562	blood:	n/a	chr6:143832807-143832817
40	JUND	chr6:143832223-143833263	H1-hESC	embryonic stem cell:	n/a	chr6:143833052-143833063
41	MAX	chr6:143832107-143833223	HepG2	liver:	n/a	chr6:143832807-143832817
42	POLR2A	chr6:143831969-143833246	PBDE	blood:	n/a	n/a
43	TEAD4	chr6:143831941-143833195	HepG2	liver:	n/a	n/a
44	USF1	chr6:143832320-143833340	HCT-116	colon:	n/a	n/a
45	JUN	chr6:143831791-143833552	K562	blood:	n/a	chr6:143832187-143832197 chr6:143832188-143832196 chr6:143833052-143833063 chr6:143832187-143832197
46	MAX	chr6:143832023-143833234	HCT-116	colon:	n/a	chr6:143832807-143832817
47	TEAD4	chr6:143832126-143833409	K562	blood:	n/a	n/a
48	E2F6	chr6:143832056-143833352	A549	lung:	n/a	n/a
49	TEAD4	chr6:143832648-143833204	H1-hESC	embryonic stem cell:	n/a	n/a
50	TAF1	chr6:143832064-143833323	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:143830223..143833460-chr6:143856589..143859655,5	MCF-7	breast:
2	chr6:143770816..143772927-chr6:143831000..143833550,2	MCF-7	breast:
3	chr6:143821189..143823852-chr6:143831025..143833660,2	MCF-7	breast:
4	chr6:143829496..143838775-chr6:143854591..143861568,17	MCF-7	breast:
5	chr6:143830620..143833385-chr6:144127423..144130418,2	K562	blood:
6	chr6:143833086..143836035-chr6:144328243..144329863,2	MCF-7	breast:
7	chr6:143769666..143773987-chr6:143831101..143834872,5	MCF-7	breast:
8	chr6:143770206..143773921-chr6:143828795..143834716,12	K562	blood:
9	chr6:143830342..143833743-chr6:144326901..144329456,3	K562	blood:
10	chr6:143832949..143834464-chr6:144384295..144386790,2	K562	blood:
11	chr6:143381314..143382842-chr6:143831327..143834058,3	K562	blood:
12	chr6:143770206..143776731-chr6:143830754..143834661,9	K562	blood:
13	chr6:143832151..143834228-chr6:144285681..144288374,2	MCF-7	breast:

Variant related genes	Relation type
FUCA2	TF binding region
ENSG00000223203	Chromatin interaction
ENSG00000118495	Chromatin interaction
ENSG00000112419	Chromatin interaction
ENSG00000001036	Chromatin interaction
ENSG00000146416	Chromatin interaction
ENSG00000189007	Chromatin interaction
ENSG00000257065	Chromatin interaction
ENSG00000034693	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs161056	0.93[ASW][hapmap]
rs161062	0.93[ASW][hapmap]
rs223232	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs223233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs686064	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9390095	0.86[ASW][hapmap]
rs9496646	0.86[ASW][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143831200-143833400	Active TSS	A549	lung
2	chr6:143831400-143833400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:143831600-143833400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
4	chr6:143831600-143833400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:143831600-143833400	Active TSS	Rectal Smooth Muscle	rectum
6	chr6:143831600-143833400	Active TSS	Right Ventricle	heart
7	chr6:143831800-143833200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:143831800-143833200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:143831800-143833200	Flanking Active TSS	Liver	Liver
10	chr6:143831800-143833200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr6:143831800-143833200	Flanking Active TSS	HUVEC	blood vessel
12	chr6:143831800-143833400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr6:143831800-143833400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:143831800-143833400	Active TSS	Brain Hippocampus Middle	brain
15	chr6:143831800-143833400	Active TSS	Psoas Muscle	Psoas
16	chr6:143832000-143833200	Active TSS	Primary B cells from cord blood	blood
17	chr6:143832000-143833200	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr6:143832000-143833200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr6:143832000-143833200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr6:143832000-143833200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:143832000-143833200	Flanking Active TSS	Fetal Thymus	thymus
22	chr6:143832000-143833200	Flanking Active TSS	HMEC	breast
23	chr6:143832000-143833400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:143832000-143833400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
25	chr6:143832000-143833400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
26	chr6:143832200-143833200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:143832200-143833200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:143832200-143833200	Active TSS	Colon Smooth Muscle	Colon
29	chr6:143832200-143833200	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr6:143832200-143833400	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr6:143832400-143833200	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr6:143832400-143833200	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:143832400-143833200	Active TSS	Primary T helper naive cells from peripheral blood	blood
34	chr6:143832400-143833400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:143832400-143833400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:143832400-143833400	Active TSS	Fetal Kidney	kidney
37	chr6:143832400-143833400	Flanking Active TSS	NH-A	brain
38	chr6:143832600-143833200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:143832600-143833200	Active TSS	Brain Germinal Matrix	brain
40	chr6:143832600-143833400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:143832600-143833400	Active TSS	Fetal Brain Female	brain
42	chr6:143832600-143833400	Flanking Active TSS	Fetal Muscle Leg	muscle
43	chr6:143832800-143833200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr6:143832800-143833200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
45	chr6:143832800-143833200	Flanking Active TSS	Primary B cells from peripheral blood	blood
46	chr6:143832800-143833200	Flanking Active TSS	Primary T cells from cord blood	blood
47	chr6:143832800-143833200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
48	chr6:143832800-143833200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
49	chr6:143832800-143833200	Flanking Active TSS	Placenta	Placenta
50	chr6:143832800-143833200	Flanking Active TSS	Thymus	Thymus

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