Variant report

Variant	rs161062
Chromosome Location	chr6:143801833-143801834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143801164..143803858-chr6:143817519..143820066,2	K562	blood:
2	chr6:143801323..143803862-chr6:143812529..143814618,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1116	0.87[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs161056	0.87[ASW][hapmap];0.87[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs161058	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs161061	0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.96[ASN][1000 genomes]
rs161065	0.90[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.95[ASN][1000 genomes]
rs161066	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs161068	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs161069	0.91[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.95[ASN][1000 genomes]
rs161072	0.87[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs161074	0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs161075	0.95[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs161076	0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs161077	0.95[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs170343	0.82[CEU][hapmap];0.92[EUR][1000 genomes]
rs223228	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs223230	0.82[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4896663	0.93[ASW][hapmap]
rs505481	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs509185	0.92[EUR][1000 genomes]
rs511839	0.92[EUR][1000 genomes]
rs528761	0.82[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8161	0.82[CEU][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs9390095	0.80[ASW][hapmap];0.82[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9496646	0.80[ASW][hapmap];0.82[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143811600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:143772800-143815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:143772800-143821200	Weak transcription	Psoas Muscle	Psoas
5	chr6:143773000-143811600	Weak transcription	Right Ventricle	heart
6	chr6:143773000-143814600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:143773000-143814800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:143773000-143815000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:143773000-143815000	Weak transcription	Colonic Mucosa	Colon
10	chr6:143773200-143827000	Weak transcription	Brain Germinal Matrix	brain
11	chr6:143773400-143814200	Weak transcription	K562	blood
12	chr6:143773400-143814600	Weak transcription	HUVEC	blood vessel
13	chr6:143773400-143814800	Weak transcription	Hela-S3	cervix
14	chr6:143773400-143815000	Weak transcription	A549	lung
15	chr6:143773400-143818200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
17	chr6:143774400-143819400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:143779000-143818200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:143779200-143816800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:143779400-143804600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:143781000-143832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:143783000-143814600	Weak transcription	Fetal Intestine Small	intestine
23	chr6:143783200-143818400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:143784600-143814800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:143784800-143814800	Weak transcription	NHLF	lung
26	chr6:143790200-143811600	Weak transcription	Pancreas	Pancrea
27	chr6:143790200-143811600	Weak transcription	Spleen	Spleen
28	chr6:143790200-143814800	Weak transcription	Small Intestine	intestine
29	chr6:143790200-143831600	Weak transcription	Esophagus	oesophagus
30	chr6:143790200-143831600	Weak transcription	Gastric	stomach
31	chr6:143791000-143802200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:143791400-143802200	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr6:143791400-143802800	Strong transcription	Liver	Liver
34	chr6:143791600-143803400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:143791600-143811800	Weak transcription	Thymus	Thymus
36	chr6:143791800-143807000	Weak transcription	Ovary	ovary
37	chr6:143791800-143811600	Weak transcription	Lung	lung
38	chr6:143792600-143802200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:143792800-143814800	Weak transcription	NHDF-Ad	bronchial
40	chr6:143793000-143802600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:143793200-143802200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:143793400-143802200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:143793600-143802600	Strong transcription	Placenta	Placenta
44	chr6:143793600-143810200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr6:143793600-143819400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:143794000-143814600	Weak transcription	NH-A	brain
47	chr6:143794400-143807200	Weak transcription	Brain Angular Gyrus	brain
48	chr6:143794400-143814800	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr6:143794400-143814800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr6:143794400-143816000	Weak transcription	Brain Substantia Nigra	brain

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