Variant report

Variant	rs161072
Chromosome Location	chr6:143783133-143783134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143782388..143784725-chr6:143785490..143787172,2	MCF-7	breast:
2	chr6:143781678..143783968-chr6:143818043..143819942,2	K562	blood:
3	chr6:143781318..143783758-chr6:143784229..143785945,2	MCF-7	breast:
4	chr6:143770284..143773615-chr6:143782620..143784981,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189007	Chromatin interaction
ENSG00000223203	Chromatin interaction
ENSG00000034693	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1116	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs161056	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs161058	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs161061	0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs161062	0.87[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs161065	0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs161066	0.97[ASN][1000 genomes]
rs161068	0.96[ASN][1000 genomes]
rs161069	0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs161074	0.97[ASN][1000 genomes]
rs161075	0.96[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs161076	0.96[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs161077	0.96[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs170343	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs223228	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs223230	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs505481	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs509185	0.91[EUR][1000 genomes]
rs511839	0.91[EUR][1000 genomes]
rs528761	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8161	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs9390095	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9496646	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143790000	Weak transcription	Pancreas	Pancrea
2	chr6:143772600-143790000	Weak transcription	Spleen	Spleen
3	chr6:143772600-143791200	Weak transcription	Lung	lung
4	chr6:143772600-143811600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:143772800-143784000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:143772800-143796600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:143772800-143798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:143772800-143815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:143772800-143821200	Weak transcription	Psoas Muscle	Psoas
11	chr6:143773000-143784000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:143773000-143791400	Weak transcription	Thymus	Thymus
13	chr6:143773000-143793400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:143773000-143793600	Weak transcription	HSMMtube	muscle
15	chr6:143773000-143797400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:143773000-143801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:143773000-143811600	Weak transcription	Right Ventricle	heart
18	chr6:143773000-143814600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:143773000-143814800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:143773000-143815000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:143773000-143815000	Weak transcription	Colonic Mucosa	Colon
22	chr6:143773200-143793000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:143773200-143793000	Weak transcription	Brain Substantia Nigra	brain
24	chr6:143773200-143793600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr6:143773200-143827000	Weak transcription	Brain Germinal Matrix	brain
26	chr6:143773400-143784000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:143773400-143791400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr6:143773400-143791400	Weak transcription	Brain Angular Gyrus	brain
29	chr6:143773400-143792800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr6:143773400-143796800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr6:143773400-143814200	Weak transcription	K562	blood
32	chr6:143773400-143814600	Weak transcription	HUVEC	blood vessel
33	chr6:143773400-143814800	Weak transcription	Hela-S3	cervix
34	chr6:143773400-143815000	Weak transcription	A549	lung
35	chr6:143773400-143818200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
37	chr6:143773600-143785000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr6:143774400-143792800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr6:143774400-143819400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr6:143775000-143796200	Weak transcription	Fetal Brain Female	brain
41	chr6:143776200-143796400	Weak transcription	Brain Hippocampus Middle	brain
42	chr6:143777800-143796800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:143778200-143793000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr6:143778800-143794200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr6:143779000-143794000	Weak transcription	GM12878-XiMat	blood
46	chr6:143779000-143818200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:143779200-143790000	Weak transcription	Small Intestine	intestine
48	chr6:143779200-143816800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr6:143779400-143784000	Weak transcription	HSMM	muscle
50	chr6:143779400-143794200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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