Variant report

Variant	rs161061
Chromosome Location	chr6:143802490-143802491
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:143802247-143803567	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:143770547..143772281-chr6:143802338..143804316,2	K562	blood:
2	chr6:143801164..143803858-chr6:143817519..143820066,2	K562	blood:
3	chr6:143801323..143803862-chr6:143812529..143814618,2	K562	blood:

Variant related genes	Relation type
PEX3	TF binding region
ENSG00000229036	TF binding region
ENSG00000223203	Chromatin interaction
ENSG00000034693	Chromatin interaction
ENSG00000189007	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1116	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[ASN][1000 genomes]
rs161056	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.87[MKK][hapmap];0.81[YRI][hapmap];0.97[ASN][1000 genomes]
rs161058	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs161062	0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.96[ASN][1000 genomes]
rs161065	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs161066	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs161068	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs161069	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs161072	0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs161074	1.00[CEU][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs161075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs161076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs161077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs223228	0.92[ASN][1000 genomes]
rs223230	0.91[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs505481	0.91[ASN][1000 genomes]
rs528761	0.91[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9390095	0.91[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9496646	0.91[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs161061	ADAT2	cis	cerebellum	SCAN
rs161061	ADAT2	cis	parietal	SCAN

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143811600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:143772800-143815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:143772800-143821200	Weak transcription	Psoas Muscle	Psoas
5	chr6:143773000-143811600	Weak transcription	Right Ventricle	heart
6	chr6:143773000-143814600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:143773000-143814800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:143773000-143815000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:143773000-143815000	Weak transcription	Colonic Mucosa	Colon
10	chr6:143773200-143827000	Weak transcription	Brain Germinal Matrix	brain
11	chr6:143773400-143814200	Weak transcription	K562	blood
12	chr6:143773400-143814600	Weak transcription	HUVEC	blood vessel
13	chr6:143773400-143814800	Weak transcription	Hela-S3	cervix
14	chr6:143773400-143815000	Weak transcription	A549	lung
15	chr6:143773400-143818200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
17	chr6:143774400-143819400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:143779000-143818200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:143779200-143816800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:143779400-143804600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:143781000-143832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:143783000-143814600	Weak transcription	Fetal Intestine Small	intestine
23	chr6:143783200-143818400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:143784600-143814800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:143784800-143814800	Weak transcription	NHLF	lung
26	chr6:143790200-143811600	Weak transcription	Pancreas	Pancrea
27	chr6:143790200-143811600	Weak transcription	Spleen	Spleen
28	chr6:143790200-143814800	Weak transcription	Small Intestine	intestine
29	chr6:143790200-143831600	Weak transcription	Esophagus	oesophagus
30	chr6:143790200-143831600	Weak transcription	Gastric	stomach
31	chr6:143791400-143802800	Strong transcription	Liver	Liver
32	chr6:143791600-143803400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:143791600-143811800	Weak transcription	Thymus	Thymus
34	chr6:143791800-143807000	Weak transcription	Ovary	ovary
35	chr6:143791800-143811600	Weak transcription	Lung	lung
36	chr6:143792800-143814800	Weak transcription	NHDF-Ad	bronchial
37	chr6:143793000-143802600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:143793600-143802600	Strong transcription	Placenta	Placenta
39	chr6:143793600-143810200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr6:143793600-143819400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:143794000-143814600	Weak transcription	NH-A	brain
42	chr6:143794400-143807200	Weak transcription	Brain Angular Gyrus	brain
43	chr6:143794400-143814800	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr6:143794400-143814800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr6:143794400-143816000	Weak transcription	Brain Substantia Nigra	brain
46	chr6:143794600-143814800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr6:143794600-143819400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:143794800-143817800	Weak transcription	HSMMtube	muscle
49	chr6:143795000-143812000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr6:143795200-143827400	Weak transcription	Aorta	Aorta

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