Variant report

Variant	rs161065
Chromosome Location	chr6:143796261-143796262
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143796239..143798571-chr6:143798863..143800734,2	K562	blood:
2	chr6:143790080..143792041-chr6:143796127..143798180,2	MCF-7	breast:
3	chr6:143795819..143798252-chr6:143812938..143815043,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1116	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[ASN][1000 genomes]
rs161056	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.99[ASN][1000 genomes]
rs161058	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs161061	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs161062	0.90[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.95[ASN][1000 genomes]
rs161066	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs161068	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs161069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs161072	0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs161074	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs161075	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs161076	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs161077	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs170343	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs223228	0.94[ASN][1000 genomes]
rs223230	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs505481	0.93[ASN][1000 genomes]
rs528761	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8161	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs9390095	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9496646	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143811600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:143772800-143796600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:143772800-143798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:143772800-143815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:143772800-143821200	Weak transcription	Psoas Muscle	Psoas
7	chr6:143773000-143797400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:143773000-143801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:143773000-143811600	Weak transcription	Right Ventricle	heart
10	chr6:143773000-143814600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:143773000-143814800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:143773000-143815000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:143773000-143815000	Weak transcription	Colonic Mucosa	Colon
14	chr6:143773200-143827000	Weak transcription	Brain Germinal Matrix	brain
15	chr6:143773400-143796800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:143773400-143814200	Weak transcription	K562	blood
17	chr6:143773400-143814600	Weak transcription	HUVEC	blood vessel
18	chr6:143773400-143814800	Weak transcription	Hela-S3	cervix
19	chr6:143773400-143815000	Weak transcription	A549	lung
20	chr6:143773400-143818200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
22	chr6:143774400-143819400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:143776200-143796400	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:143777800-143796800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:143779000-143818200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:143779200-143816800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:143779400-143804600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:143781000-143832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:143781200-143798000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr6:143781200-143800200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr6:143782600-143796600	Weak transcription	HMEC	breast
32	chr6:143783000-143814600	Weak transcription	Fetal Intestine Small	intestine
33	chr6:143783200-143818400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:143784600-143814800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr6:143784800-143814800	Weak transcription	NHLF	lung
36	chr6:143789800-143797000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:143790200-143798000	Weak transcription	Left Ventricle	heart
38	chr6:143790200-143811600	Weak transcription	Pancreas	Pancrea
39	chr6:143790200-143811600	Weak transcription	Spleen	Spleen
40	chr6:143790200-143814800	Weak transcription	Small Intestine	intestine
41	chr6:143790200-143831600	Weak transcription	Esophagus	oesophagus
42	chr6:143790200-143831600	Weak transcription	Gastric	stomach
43	chr6:143791000-143801000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:143791000-143802200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:143791400-143797400	Strong transcription	Fetal Lung	lung
46	chr6:143791400-143799800	Strong transcription	Primary B cells from peripheral blood	blood
47	chr6:143791400-143800600	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr6:143791400-143800600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:143791400-143802200	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr6:143791400-143802800	Strong transcription	Liver	Liver

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