Variant report

Variant	rs161077
Chromosome Location	chr6:143776858-143776859
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143774402..143777046-chr6:143808745..143811198,2	K562	blood:
2	chr6:143771894..143773645-chr6:143774533..143780874,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000034693	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1116	0.96[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[ASN][1000 genomes]
rs161056	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs161058	0.96[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs161061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs161062	0.95[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs161065	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs161066	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs161068	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs161069	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs161072	0.96[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs161074	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs161075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs161076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs170343	0.81[JPT][hapmap]
rs223228	0.93[ASN][1000 genomes]
rs223230	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs505481	0.92[ASN][1000 genomes]
rs528761	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8161	0.80[JPT][hapmap]
rs9390095	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9496646	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs161077	PEX3	cis	brain	BrainEAC

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772400-143778800	Weak transcription	Small Intestine	intestine
2	chr6:143772600-143780600	Weak transcription	Left Ventricle	heart
3	chr6:143772600-143780800	Weak transcription	Esophagus	oesophagus
4	chr6:143772600-143790000	Weak transcription	Pancreas	Pancrea
5	chr6:143772600-143790000	Weak transcription	Spleen	Spleen
6	chr6:143772600-143791200	Weak transcription	Lung	lung
7	chr6:143772600-143811600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:143772800-143780600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:143772800-143780600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:143772800-143780600	Weak transcription	Placenta	Placenta
12	chr6:143772800-143780800	Weak transcription	Fetal Thymus	thymus
13	chr6:143772800-143784000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:143772800-143796600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:143772800-143798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:143772800-143815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:143772800-143821200	Weak transcription	Psoas Muscle	Psoas
18	chr6:143773000-143778800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:143773000-143780400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:143773000-143780600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:143773000-143780600	Weak transcription	Fetal Intestine Large	intestine
22	chr6:143773000-143780600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr6:143773000-143781800	Weak transcription	Fetal Stomach	stomach
24	chr6:143773000-143782000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:143773000-143782000	Weak transcription	Ovary	ovary
26	chr6:143773000-143784000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:143773000-143791400	Weak transcription	Thymus	Thymus
28	chr6:143773000-143793400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr6:143773000-143793600	Weak transcription	HSMMtube	muscle
30	chr6:143773000-143797400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:143773000-143801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:143773000-143811600	Weak transcription	Right Ventricle	heart
33	chr6:143773000-143814600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:143773000-143814800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:143773000-143815000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:143773000-143815000	Weak transcription	Colonic Mucosa	Colon
37	chr6:143773200-143780200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:143773200-143780600	Weak transcription	Adipose Nuclei	Adipose
39	chr6:143773200-143793000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:143773200-143793000	Weak transcription	Brain Substantia Nigra	brain
41	chr6:143773200-143793600	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr6:143773200-143827000	Weak transcription	Brain Germinal Matrix	brain
43	chr6:143773400-143777200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr6:143773400-143777800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr6:143773400-143778000	Weak transcription	HepG2	liver
46	chr6:143773400-143778400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:143773400-143778400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:143773400-143778600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr6:143773400-143778800	Weak transcription	Fetal Heart	heart
50	chr6:143773400-143778800	Weak transcription	NH-A	brain

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