Variant report

Variant	rs4896795
Chromosome Location	chr6:145693589-145693590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10223879	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11155417	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12661545	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1856266	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1970320	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1970321	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2039698	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34847081	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35270275	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4142213	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4896796	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896799	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6922610	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6939342	0.96[ASN][1000 genomes]
rs9373455	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376921	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376922	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376924	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376933	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9390310	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390311	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390314	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390315	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9399545	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403692	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403694	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403696	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9484987	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497280	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497287	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017166	chr6:145677071-145808448	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145689600-145694200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:145690000-145695200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:145692800-145693600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:145692800-145693800	ZNF genes & repeats	GM12878-XiMat	blood
5	chr6:145692800-145694400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:145693000-145694200	Active TSS	NHDF-Ad	bronchial
7	chr6:145693000-145694400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:145693000-145694800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:145693200-145693800	Enhancers	Adipose Nuclei	Adipose
10	chr6:145693200-145694200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:145693200-145694200	Weak transcription	Left Ventricle	heart
12	chr6:145693200-145694200	Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr6:145693200-145694600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:145693200-145695400	Enhancers	Stomach Mucosa	stomach
15	chr6:145693400-145693800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr6:145693400-145693800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:145693400-145693800	Flanking Active TSS	Fetal Heart	heart
18	chr6:145693400-145694000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:145693400-145694000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:145693400-145694200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:145693400-145694200	Active TSS	Brain Anterior Caudate	brain
22	chr6:145693400-145694200	Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr6:145693400-145694200	Active TSS	NHLF	lung
24	chr6:145693400-145694200	Active TSS	Osteobl	bone
25	chr6:145693400-145694600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:145693400-145695000	Enhancers	Pancreatic Islets	Pancreatic Islet

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