Variant report

Variant	rs9390310
Chromosome Location	chr6:145694224-145694225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10223879	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11155417	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12661545	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856266	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1970320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1970321	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34847081	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35270275	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142213	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896795	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896796	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896799	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922610	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6939342	0.99[ASN][1000 genomes]
rs9373455	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376921	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376922	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376924	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376933	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9390311	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9390314	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390315	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399545	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403692	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403694	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497287	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017166	chr6:145677071-145808448	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145690000-145695200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:145692800-145694400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:145693000-145694400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr6:145693000-145694800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:145693200-145694600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:145693200-145695400	Enhancers	Stomach Mucosa	stomach
7	chr6:145693400-145694600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:145693400-145695000	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr6:145693600-145694400	Active TSS	Muscle Satellite Cultured Cells	--
10	chr6:145693600-145694400	Active TSS	Liver	Liver
11	chr6:145693600-145694400	Active TSS	Duodenum Mucosa	Duodenum
12	chr6:145693800-145694400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:145693800-145694400	Active TSS	Brain Angular Gyrus	brain
14	chr6:145694000-145694400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:145694000-145694400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:145694000-145694400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:145694000-145694400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:145694000-145694400	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr6:145694000-145694400	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr6:145694000-145694400	Flanking Active TSS	Brain Substantia Nigra	brain
21	chr6:145694000-145694400	Enhancers	Fetal Lung	lung
22	chr6:145694000-145694400	Enhancers	Right Ventricle	heart
23	chr6:145694000-145694400	Flanking Active TSS	GM12878-XiMat	blood
24	chr6:145694000-145696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:145694200-145694400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:145694200-145694400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:145694200-145694400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:145694200-145694400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:145694200-145694400	Enhancers	Aorta	Aorta
30	chr6:145694200-145694400	Flanking Active TSS	Brain Anterior Caudate	brain
31	chr6:145694200-145694400	Flanking Active TSS	Brain Cingulate Gyrus	brain
32	chr6:145694200-145694400	Flanking Active TSS	Brain Hippocampus Middle	brain
33	chr6:145694200-145694400	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr6:145694200-145694400	Flanking Active TSS	Fetal Heart	heart
35	chr6:145694200-145694400	Enhancers	Left Ventricle	heart
36	chr6:145694200-145694400	Enhancers	Pancreas	Pancrea
37	chr6:145694200-145694400	Enhancers	Psoas Muscle	Psoas
38	chr6:145694200-145694400	Flanking Active TSS	Right Atrium	heart
39	chr6:145694200-145694400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
40	chr6:145694200-145694400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
41	chr6:145694200-145694400	Flanking Active TSS	NHDF-Ad	bronchial
42	chr6:145694200-145694400	Flanking Active TSS	Osteobl	bone
43	chr6:145694200-145694600	Enhancers	NHLF	lung
44	chr6:145694200-145694800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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