Variant report

Variant	rs4897080
Chromosome Location	chr6:149423228-149423229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149422905..149424732-chr6:149427492..149429213,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10457074	0.81[JPT][hapmap]
rs10872630	0.93[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs10872631	0.93[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs11755147	0.81[CEU][hapmap];0.93[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];0.82[TSI][hapmap];0.89[ASN][1000 genomes]
rs11759315	0.82[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12201653	0.81[JPT][hapmap]
rs12211152	0.80[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1317171	0.81[JPT][hapmap]
rs17669693	0.82[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs17732007	1.00[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs1934218	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs1934220	0.82[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1934225	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2879862	0.90[ASN][1000 genomes]
rs3935945	0.80[CHB][hapmap];0.97[CHD][hapmap];0.84[MEX][hapmap]
rs4073018	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4897077	0.88[ASN][1000 genomes]
rs4897078	0.93[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs62426156	0.90[ASN][1000 genomes]
rs6901019	0.81[JPT][hapmap]
rs6903827	0.93[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs6915298	0.81[JPT][hapmap]
rs6927215	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6932386	0.82[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs6935330	0.81[JPT][hapmap]
rs6936176	0.81[JPT][hapmap]
rs6939103	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs7747463	0.81[JPT][hapmap]
rs7756263	0.87[JPT][hapmap]
rs7761119	0.81[JPT][hapmap]
rs7765778	0.80[JPT][hapmap]
rs7772696	0.93[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs7776117	0.81[JPT][hapmap]
rs9285516	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv830842	chr6:149272321-149427340	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149423000-149424000	Enhancers	Dnd41	blood

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