Variant report

Variant	rs7761119
Chromosome Location	chr6:149411689-149411690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149406617..149408383-chr6:149409345..149411999,2	K562	blood:
2	chr6:149411104..149413462-chr6:150038624..150040164,2	MCF-7	breast:
3	chr6:149409974..149412815-chr6:149414835..149416934,2	K562	blood:
4	chr6:149406617..149408839-chr6:149409602..149411999,2	K562	blood:
5	chr6:149411028..149414367-chr6:149415075..149417889,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131023	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10457074	0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.86[ASN][1000 genomes]
rs10872629	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10872630	0.81[JPT][hapmap]
rs10872631	0.87[JPT][hapmap]
rs11755147	0.87[JPT][hapmap]
rs11759315	0.86[JPT][hapmap]
rs12201653	0.87[JPT][hapmap]
rs12211152	0.93[JPT][hapmap]
rs1316535	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1317171	0.86[CEU][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1320575	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17669693	0.87[JPT][hapmap]
rs17732007	0.87[JPT][hapmap]
rs1934217	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1934220	0.87[JPT][hapmap]
rs2340798	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2340802	0.86[GIH][hapmap];0.91[MEX][hapmap]
rs4243484	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4318907	0.91[MEX][hapmap]
rs4897078	0.87[JPT][hapmap]
rs6570933	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6570934	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6570935	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6570937	0.80[EUR][1000 genomes]
rs6570938	0.81[EUR][1000 genomes]
rs6901019	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6901863	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6903827	0.87[JPT][hapmap]
rs6915298	0.86[CEU][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6931675	0.87[ASW][hapmap];0.86[CEU][hapmap];0.81[CHD][hapmap];0.92[MEX][hapmap];0.90[MKK][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6931744	0.91[GIH][hapmap];0.87[MEX][hapmap]
rs6932386	0.87[JPT][hapmap]
rs6935330	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6936176	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6939103	0.87[JPT][hapmap]
rs7738162	0.82[CEU][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7747463	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7748978	0.83[MEX][hapmap]
rs7756263	0.81[JPT][hapmap]
rs7760242	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7765778	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7772696	0.87[JPT][hapmap]
rs7776117	0.86[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9285516	1.00[ASW][hapmap];0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];0.89[TSI][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322166	0.84[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9377188	0.87[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv830842	chr6:149272321-149427340	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149395000-149415000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:149399200-149415000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:149402200-149414400	Weak transcription	Fetal Kidney	kidney
4	chr6:149402200-149414600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:149402200-149415000	Weak transcription	Esophagus	oesophagus
6	chr6:149402400-149416200	Weak transcription	Fetal Heart	heart
7	chr6:149405600-149413000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:149405600-149413600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:149405800-149414000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:149406200-149413400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:149406200-149413600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:149407000-149413200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:149407200-149412000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:149407200-149412200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:149407200-149413200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:149407600-149411800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:149409800-149413000	Weak transcription	Dnd41	blood
18	chr6:149409800-149415000	Weak transcription	Gastric	stomach
19	chr6:149410000-149415000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:149410200-149414800	Weak transcription	Placenta	Placenta
21	chr6:149410600-149415000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:149410800-149413000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:149410800-149418400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:149411200-149411800	Enhancers	Primary hematopoietic stem cells	blood
25	chr6:149411600-149412200	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links