Variant report

Variant	rs6570938
Chromosome Location	chr6:149428965-149428966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1316535	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1934217	0.81[ASN][1000 genomes]
rs4243484	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6570933	0.81[EUR][1000 genomes]
rs6570937	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6901019	0.80[EUR][1000 genomes]
rs6902452	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906914	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740790	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7752744	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761119	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149427400-149430800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:149428000-149430200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:149428200-149430400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:149428600-149429400	Enhancers	Placenta	Placenta
5	chr6:149428600-149430000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:149428600-149430200	Enhancers	Fetal Muscle Leg	muscle
7	chr6:149428600-149430200	Enhancers	Fetal Stomach	stomach
8	chr6:149428600-149430200	Enhancers	Ovary	ovary
9	chr6:149428800-149429000	Enhancers	Stomach Smooth Muscle	stomach
10	chr6:149428800-149429200	Enhancers	Fetal Muscle Trunk	muscle
11	chr6:149428800-149430000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:149428800-149430000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:149428800-149430000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:149428800-149430000	Enhancers	Colon Smooth Muscle	Colon
15	chr6:149428800-149430200	Enhancers	Brain Cingulate Gyrus	brain
16	chr6:149428800-149430200	Enhancers	Brain Substantia Nigra	brain
17	chr6:149428800-149430200	Enhancers	K562	blood
18	chr6:149428800-149430600	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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