Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149427500..149429551-chr6:149437595..149440317,3	K562	blood:

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1316535	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1320575	0.80[EUR][1000 genomes]
rs1934217	0.81[ASN][1000 genomes]
rs2340798	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs4243484	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6570937	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6570938	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901019	0.91[CEU][hapmap]
rs6906914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931675	0.86[CEU][hapmap]
rs6935330	0.87[CEU][hapmap]
rs7740790	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7752744	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761119	0.91[CEU][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap]
rs9285516	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149427400-149430800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:149428000-149430200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:149428200-149430400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:149428600-149430000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:149428600-149430200	Enhancers	Fetal Muscle Leg	muscle
6	chr6:149428600-149430200	Enhancers	Fetal Stomach	stomach
7	chr6:149428600-149430200	Enhancers	Ovary	ovary
8	chr6:149428800-149430000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:149428800-149430000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:149428800-149430000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:149428800-149430000	Enhancers	Colon Smooth Muscle	Colon
12	chr6:149428800-149430200	Enhancers	Brain Cingulate Gyrus	brain
13	chr6:149428800-149430200	Enhancers	Brain Substantia Nigra	brain
14	chr6:149428800-149430200	Enhancers	K562	blood
15	chr6:149428800-149430600	Enhancers	Brain Hippocampus Middle	brain
16	chr6:149429000-149430200	Enhancers	Brain Anterior Caudate	brain
17	chr6:149429200-149429600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:149429200-149437200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:149429400-149430200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:149429400-149430200	Enhancers	GM12878-XiMat	blood
21	chr6:149429400-149430400	Enhancers	Rectal Smooth Muscle	rectum

Quick Search: