Variant report

Variant	rs1316535
Chromosome Location	chr6:149417916-149417917
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149405339..149407233-chr6:149416159..149418196,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10457074	0.87[JPT][hapmap]
rs10872630	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs10872631	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs11755147	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs11759315	0.85[JPT][hapmap]
rs12201653	0.87[JPT][hapmap]
rs12211152	0.80[CHB][hapmap];0.93[JPT][hapmap]
rs1317171	0.87[JPT][hapmap]
rs1320575	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17669693	0.86[JPT][hapmap]
rs17732007	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs1934220	0.86[JPT][hapmap]
rs1934225	0.93[CHB][hapmap]
rs3935945	0.82[CHD][hapmap]
rs4243484	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4897078	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs6570933	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6570934	0.80[ASN][1000 genomes]
rs6570935	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6570937	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6570938	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6901019	0.87[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6902452	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6903827	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs6906914	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6915298	0.87[JPT][hapmap]
rs6932386	0.86[JPT][hapmap]
rs6935330	0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs6936176	0.87[JPT][hapmap]
rs6939103	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs7740790	0.85[EUR][1000 genomes]
rs7747463	0.87[JPT][hapmap]
rs7752744	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7756263	0.80[JPT][hapmap]
rs7760242	0.81[ASN][1000 genomes]
rs7761119	0.87[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7765778	0.86[JPT][hapmap]
rs7772696	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs7776117	0.87[JPT][hapmap]
rs9285516	0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs9322166	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv830842	chr6:149272321-149427340	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149410800-149418400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:149414200-149418400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:149414800-149418000	Enhancers	Primary hematopoietic stem cells	blood
4	chr6:149415200-149418200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:149415200-149419800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:149415400-149418400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:149415600-149418000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:149416200-149418800	Weak transcription	Fetal Lung	lung
9	chr6:149416400-149418000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr6:149416400-149418000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:149416400-149418800	Enhancers	Primary T cells fromperipheralblood	blood
12	chr6:149416400-149418800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:149416400-149418800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:149416600-149418200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr6:149416800-149418400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr6:149417000-149418000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr6:149417200-149418000	Enhancers	Brain Hippocampus Middle	brain
18	chr6:149417600-149418200	Enhancers	Dnd41	blood
19	chr6:149417600-149418600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:149417800-149418000	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr6:149417800-149418400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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