Variant report

Variant	rs6570934
Chromosome Location	chr6:149413372-149413373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149413026..149415707-chr6:149636952..149639609,2	MCF-7	breast:
2	chr6:149412160..149414295-chr6:149861295..149864069,2	K562	blood:
3	chr6:149411104..149413462-chr6:150038624..150040164,2	MCF-7	breast:
4	chr6:149412611..149415289-chr6:149531964..149533952,2	MCF-7	breast:
5	chr6:149403546..149405642-chr6:149411704..149413513,2	MCF-7	breast:
6	chr6:149411028..149414367-chr6:149415075..149417889,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000055208	Chromatin interaction
ENSG00000131023	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10457074	0.83[ASN][1000 genomes]
rs10872629	0.90[AMR][1000 genomes]
rs1316535	0.80[ASN][1000 genomes]
rs1317171	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1320575	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1934217	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2340798	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4243484	0.80[ASN][1000 genomes]
rs6570933	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6570935	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6901019	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6901863	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6915298	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6931675	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6935330	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6936176	0.84[ASN][1000 genomes]
rs7738162	0.90[AMR][1000 genomes]
rs7747463	0.83[ASN][1000 genomes]
rs7760242	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7761119	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7776117	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9285516	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9322166	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv830842	chr6:149272321-149427340	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149395000-149415000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:149399200-149415000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:149402200-149414400	Weak transcription	Fetal Kidney	kidney
4	chr6:149402200-149414600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:149402200-149415000	Weak transcription	Esophagus	oesophagus
6	chr6:149402400-149416200	Weak transcription	Fetal Heart	heart
7	chr6:149405600-149413600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:149405800-149414000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:149406200-149413400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:149406200-149413600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:149409800-149415000	Weak transcription	Gastric	stomach
12	chr6:149410000-149415000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:149410200-149414800	Weak transcription	Placenta	Placenta
14	chr6:149410600-149415000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:149410800-149418400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:149411800-149414800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:149411800-149415800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:149412200-149413600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:149412200-149415200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:149412400-149414600	Weak transcription	Fetal Stomach	stomach
21	chr6:149413000-149415600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:149413000-149415600	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr6:149413000-149416000	Enhancers	Primary T cells fromperipheralblood	blood
24	chr6:149413000-149416000	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr6:149413000-149416000	Enhancers	Dnd41	blood
26	chr6:149413200-149413400	Enhancers	Fetal Lung	lung
27	chr6:149413200-149414000	Enhancers	GM12878-XiMat	blood
28	chr6:149413200-149415200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:149413200-149416000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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