Variant report

Variant	rs4243484
Chromosome Location	chr6:149423263-149423264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149422905..149424732-chr6:149427492..149429213,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10457074	0.94[JPT][hapmap]
rs10872631	0.80[JPT][hapmap]
rs11755147	0.80[JPT][hapmap]
rs11759315	0.81[JPT][hapmap]
rs12201653	0.81[JPT][hapmap]
rs12211152	0.88[JPT][hapmap]
rs1316535	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1317171	0.94[JPT][hapmap]
rs1320575	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17669693	0.82[JPT][hapmap]
rs1934220	0.80[JPT][hapmap]
rs2340798	0.86[CEU][hapmap];0.81[CHB][hapmap]
rs4897078	0.82[JPT][hapmap]
rs6570933	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6570934	0.80[ASN][1000 genomes]
rs6570935	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6570937	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6570938	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6901019	0.91[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6902452	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6903827	0.80[JPT][hapmap]
rs6906914	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6915298	0.94[JPT][hapmap]
rs6931675	0.86[CEU][hapmap]
rs6932386	0.82[JPT][hapmap]
rs6935330	0.87[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs6936176	0.94[JPT][hapmap]
rs6939103	0.82[JPT][hapmap]
rs7740790	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7747463	0.94[JPT][hapmap]
rs7752744	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7760242	0.81[ASN][1000 genomes]
rs7761119	0.91[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7765778	0.94[JPT][hapmap]
rs7772696	0.82[JPT][hapmap]
rs7776117	0.94[JPT][hapmap]
rs9285516	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs9322166	0.84[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv830842	chr6:149272321-149427340	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149423000-149424000	Enhancers	Dnd41	blood

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