Variant report

Variant	rs7740790
Chromosome Location	chr6:149432693-149432694
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1316535	0.85[EUR][1000 genomes]
rs4243484	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6570937	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6570938	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6902452	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6906914	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7752744	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149429200-149437200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:149430200-149433000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:149430200-149434000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:149430200-149434000	Weak transcription	Ovary	ovary
5	chr6:149430200-149437200	Weak transcription	Brain Substantia Nigra	brain
6	chr6:149430600-149437200	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:149431600-149434400	Enhancers	Primary B cells from cord blood	blood
8	chr6:149431600-149434800	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:149432000-149434400	Flanking Active TSS	GM12878-XiMat	blood
10	chr6:149432000-149434600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:149432200-149433400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr6:149432400-149432800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:149432600-149432800	Enhancers	Primary T cells fromperipheralblood	blood
14	chr6:149432600-149432800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr6:149432600-149433200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr6:149432600-149433600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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