Variant report

Variant	rs4897458
Chromosome Location	chr6:131063724-131063725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11154605	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11154606	0.84[EUR][1000 genomes]
rs11154607	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11751010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1605604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17059550	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1988279	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4895893	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4897462	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4897467	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62422290	0.93[EUR][1000 genomes]
rs62425266	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6914815	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937163	0.98[ASN][1000 genomes]
rs9492710	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9492712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4897458	ENPP1	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131059000-131065800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131063000-131063800	Enhancers	NHDF-Ad	bronchial
3	chr6:131063200-131064000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:131063400-131063800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:131063400-131063800	Enhancers	NH-A	brain
6	chr6:131063400-131064000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:131063400-131064000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:131063400-131064800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:131063600-131063800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:131063600-131063800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:131063600-131064400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:131063600-131064400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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