Variant report

Variant	rs62425266
Chromosome Location	chr6:131092537-131092538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131085476..131087927-chr6:131091434..131093029,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11154605	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11154606	0.87[EUR][1000 genomes]
rs11154607	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11751010	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11753133	0.85[EUR][1000 genomes]
rs1497890	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1605604	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17059459	0.85[EUR][1000 genomes]
rs17059460	0.85[EUR][1000 genomes]
rs17059464	0.85[EUR][1000 genomes]
rs17059550	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1988279	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2030022	0.83[EUR][1000 genomes]
rs4895892	0.81[EUR][1000 genomes]
rs4895893	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4897458	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4897462	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4897467	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62422290	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62431630	0.81[EUR][1000 genomes]
rs6914815	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6937163	0.94[ASN][1000 genomes]
rs7747747	0.84[EUR][1000 genomes]
rs9492699	0.85[EUR][1000 genomes]
rs9492704	0.85[EUR][1000 genomes]
rs9492710	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9492712	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs994211	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1025019	chr6:131074711-131116070	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604665	chr6:131077027-131115817	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604666	chr6:131078180-131122295	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131091000-131099400	Weak transcription	Fetal Brain Male	brain

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