Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11154605	0.81[EUR][1000 genomes]
rs11154606	0.84[EUR][1000 genomes]
rs11154607	0.82[EUR][1000 genomes]
rs11753133	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12209069	0.86[ASN][1000 genomes]
rs17059459	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17059460	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17059464	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17059550	0.82[EUR][1000 genomes]
rs2030022	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895892	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4897467	0.82[EUR][1000 genomes]
rs62422290	0.82[EUR][1000 genomes]
rs62425266	0.85[EUR][1000 genomes]
rs62431630	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6569699	0.98[ASN][1000 genomes]
rs7745376	0.98[ASN][1000 genomes]
rs7747747	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747811	0.99[ASN][1000 genomes]
rs9483172	0.86[ASN][1000 genomes]
rs9492699	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9492704	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9492710	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs994211	ENPP1	cis	parietal	SCAN
rs994211	TMEM200A	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131018400-131029200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:131019200-131022400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:131019200-131023000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr6:131019200-131023000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:131019200-131023000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:131019400-131022800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:131019600-131022400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:131019600-131022600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:131019600-131023200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:131021600-131023800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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