Variant report

Variant	rs9492699
Chromosome Location	chr6:131029671-131029672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11154605	0.81[EUR][1000 genomes]
rs11154606	0.84[EUR][1000 genomes]
rs11154607	0.82[EUR][1000 genomes]
rs11753133	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12209069	0.86[ASN][1000 genomes]
rs17059459	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17059460	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17059464	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17059550	0.82[EUR][1000 genomes]
rs2030022	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4895892	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4897467	0.82[EUR][1000 genomes]
rs62422290	0.82[EUR][1000 genomes]
rs62425266	0.85[EUR][1000 genomes]
rs62431630	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6569699	0.99[ASN][1000 genomes]
rs7745376	0.99[ASN][1000 genomes]
rs7747747	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7747811	0.98[ASN][1000 genomes]
rs9483172	0.86[ASN][1000 genomes]
rs9492704	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9492710	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs994211	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131029000-131029800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:131029000-131030000	Enhancers	Primary hematopoietic stem cells	blood
3	chr6:131029000-131030000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:131029000-131030200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:131029200-131029800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:131029200-131029800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:131029200-131029800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:131029200-131029800	Enhancers	Fetal Stomach	stomach
9	chr6:131029200-131029800	Enhancers	Small Intestine	intestine
10	chr6:131029200-131030000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:131029200-131030000	Enhancers	Primary T cells from cord blood	blood
12	chr6:131029200-131030000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr6:131029200-131030000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:131029200-131030000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:131029200-131030000	Enhancers	Dnd41	blood
16	chr6:131029200-131030200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:131029200-131030200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:131029200-131030200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:131029400-131029800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:131029400-131030000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:131029600-131029800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:131029600-131030000	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr6:131029600-131030200	Bivalent Enhancer	HUVEC	blood vessel
24	chr6:131029600-131031400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:131029600-131034200	Weak transcription	Fetal Kidney	kidney

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