Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11154605	0.81[EUR][1000 genomes]
rs11154606	0.84[EUR][1000 genomes]
rs11154607	0.82[EUR][1000 genomes]
rs11753133	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209069	0.99[ASN][1000 genomes]
rs17059459	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059460	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059464	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059550	0.82[EUR][1000 genomes]
rs2030022	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35804027	0.83[ASN][1000 genomes]
rs4895892	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4897467	0.82[EUR][1000 genomes]
rs62422290	0.82[EUR][1000 genomes]
rs62425266	0.85[EUR][1000 genomes]
rs62431630	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6569699	0.87[ASN][1000 genomes]
rs7745376	0.87[ASN][1000 genomes]
rs7747747	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7747811	0.86[ASN][1000 genomes]
rs9483172	0.99[ASN][1000 genomes]
rs9492699	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9492710	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs994211	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131037000-131045200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:131039600-131045000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:131039800-131044800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:131043800-131044800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr6:131043800-131044800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:131043800-131046800	Weak transcription	Aorta	Aorta
7	chr6:131044600-131045800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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