Variant report

Variant	rs4902577
Chromosome Location	chr14:68873297-68873298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68863838..68866613-chr14:68869983..68873336,6	MCF-7	breast:
2	chr14:68869686..68872632-chr14:68873283..68875194,2	MCF-7	breast:
3	chr14:68773440..68776404-chr14:68870771..68875059,3	MCF-7	breast:
4	chr14:68866618..68869023-chr14:68869534..68873462,3	K562	blood:
5	chr14:68870800..68874143-chr14:68877042..68880241,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1006816	0.92[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10132294	0.82[CHB][hapmap]
rs10146321	0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs10150212	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11158734	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158735	0.80[ASN][1000 genomes]
rs11158736	0.82[ASN][1000 genomes]
rs11625452	0.83[JPT][hapmap]
rs12432583	0.81[CEU][hapmap]
rs12889666	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12889770	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12890360	0.83[CEU][hapmap]
rs12894080	0.81[CEU][hapmap]
rs12898087	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1956536	0.84[ASN][1000 genomes]
rs1956537	0.91[CEU][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2331694	0.84[CEU][hapmap]
rs2331696	0.84[JPT][hapmap]
rs3784116	0.95[JPT][hapmap]
rs3784117	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs3784119	0.82[JPT][hapmap]
rs3784120	0.91[CEU][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs4902576	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014025	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68863600-68877200	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:68864400-68874400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:68864800-68874200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr14:68864800-68878000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:68865000-68877000	Weak transcription	Pancreas	Pancrea
6	chr14:68865800-68874600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr14:68866400-68873400	Enhancers	HMEC	breast
8	chr14:68866600-68873400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr14:68866800-68873400	Enhancers	NHLF	lung
10	chr14:68867200-68874400	Weak transcription	Fetal Intestine Large	intestine
11	chr14:68867200-68875200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:68867200-68876200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr14:68867200-68876400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr14:68867200-68886400	Weak transcription	Dnd41	blood
15	chr14:68867400-68874200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr14:68868200-68874600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:68868200-68887200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr14:68868400-68874600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:68868400-68876000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:68868600-68873400	Enhancers	Primary T cells from cord blood	blood
21	chr14:68869000-68873600	Weak transcription	Fetal Intestine Small	intestine
22	chr14:68869400-68873400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr14:68869800-68873400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:68869800-68873400	Enhancers	NHEK	skin
25	chr14:68870200-68873400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:68870600-68875600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr14:68870800-68873400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:68870800-68876000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:68870800-68877400	Enhancers	Primary B cells from cord blood	blood
30	chr14:68871200-68875600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr14:68871400-68873400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:68871600-68874800	Weak transcription	Colonic Mucosa	Colon
33	chr14:68871600-68876000	Weak transcription	Adipose Nuclei	Adipose
34	chr14:68871800-68873600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr14:68871800-68874400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr14:68871800-68874600	Weak transcription	Stomach Mucosa	stomach
37	chr14:68871800-68875200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr14:68871800-68875600	Weak transcription	Fetal Muscle Leg	muscle
39	chr14:68871800-68875800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr14:68871800-68876000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr14:68871800-68876000	Weak transcription	Fetal Heart	heart
42	chr14:68871800-68876200	Weak transcription	Ovary	ovary
43	chr14:68871800-68876200	Weak transcription	Spleen	Spleen
44	chr14:68871800-68879000	Weak transcription	NH-A	brain
45	chr14:68871800-68880800	Weak transcription	Fetal Lung	lung
46	chr14:68872000-68874200	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr14:68872000-68874400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr14:68872000-68874600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr14:68872000-68875000	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr14:68872200-68874600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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