Variant report

Variant	rs10150212
Chromosome Location	chr14:68872106-68872107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68863838..68866613-chr14:68869983..68873336,6	MCF-7	breast:
2	chr14:68858725..68872867-chr14:69250734..69263104,36	MCF-7	breast:
3	chr14:68870989..68872131-chr14:68925489..68926072,7	MCF-7	breast:
4	chr14:68869686..68872632-chr14:68873283..68875194,2	MCF-7	breast:
5	chr14:68773440..68776404-chr14:68870771..68875059,3	MCF-7	breast:
6	chr14:68866618..68869023-chr14:68869534..68873462,3	K562	blood:
7	chr14:68870904..68872882-chr14:68924657..68927546,2	MCF-7	breast:
8	chr14:68870800..68874143-chr14:68877042..68880241,3	MCF-7	breast:
9	chr14:68867029..68869423-chr14:68870114..68872143,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1006816	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11158735	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158736	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11625452	0.89[ASN][1000 genomes]
rs12435046	0.91[ASN][1000 genomes]
rs12889770	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1956536	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956537	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2331696	0.93[ASN][1000 genomes]
rs3784119	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3784120	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4902576	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4902577	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55665241	0.90[ASN][1000 genomes]
rs8014025	0.89[ASN][1000 genomes]
rs8014234	0.88[ASN][1000 genomes]
rs8021199	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68863600-68877200	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:68864400-68874400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:68864800-68874200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr14:68864800-68878000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:68865000-68872400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr14:68865000-68877000	Weak transcription	Pancreas	Pancrea
7	chr14:68865800-68874600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr14:68866200-68873200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr14:68866400-68873400	Enhancers	HMEC	breast
10	chr14:68866600-68872200	Enhancers	Fetal Thymus	thymus
11	chr14:68866600-68873000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:68866600-68873400	Enhancers	Placenta Amnion	Placenta Amnion
13	chr14:68866800-68872200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr14:68866800-68873400	Enhancers	NHLF	lung
15	chr14:68867200-68874400	Weak transcription	Fetal Intestine Large	intestine
16	chr14:68867200-68875200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:68867200-68876200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr14:68867200-68876400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr14:68867200-68886400	Weak transcription	Dnd41	blood
20	chr14:68867400-68872800	Weak transcription	HSMM	muscle
21	chr14:68867400-68874200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:68868000-68872200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr14:68868000-68872600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr14:68868200-68874600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr14:68868200-68887200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr14:68868400-68874600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr14:68868400-68876000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr14:68868600-68873400	Enhancers	Primary T cells from cord blood	blood
29	chr14:68869000-68873600	Weak transcription	Fetal Intestine Small	intestine
30	chr14:68869200-68873200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr14:68869400-68873400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr14:68869600-68873000	Enhancers	Osteobl	bone
33	chr14:68869600-68873200	Enhancers	NHDF-Ad	bronchial
34	chr14:68869800-68873400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:68869800-68873400	Enhancers	NHEK	skin
36	chr14:68870000-68872600	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr14:68870200-68873400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr14:68870600-68875600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr14:68870800-68872200	Enhancers	Primary hematopoietic stem cells	blood
40	chr14:68870800-68873400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr14:68870800-68876000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr14:68870800-68877400	Enhancers	Primary B cells from cord blood	blood
43	chr14:68871000-68872600	Enhancers	Placenta	Placenta
44	chr14:68871200-68872600	Enhancers	Small Intestine	intestine
45	chr14:68871200-68875600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr14:68871400-68872200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr14:68871400-68872200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr14:68871400-68872200	Enhancers	Esophagus	oesophagus
49	chr14:68871400-68873200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr14:68871400-68873400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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