Variant report

Variant	rs8021199
Chromosome Location	chr14:68857997-68857998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68855776..68858579-chr14:69251662..69254068,2	MCF-7	breast:
2	chr14:68853183..68855345-chr14:68857731..68860425,2	MCF-7	breast:
3	chr14:68857574..68861262-chr14:68863734..68866586,4	K562	blood:

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1006816	0.82[JPT][hapmap]
rs10150212	0.80[ASN][1000 genomes]
rs11158732	0.89[CEU][hapmap]
rs11625452	0.84[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11627490	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11628653	0.84[CEU][hapmap]
rs12435046	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1885014	1.00[CEU][hapmap];0.83[YRI][hapmap];0.83[EUR][1000 genomes]
rs1956536	0.80[ASN][1000 genomes]
rs1956537	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs1977211	0.80[EUR][1000 genomes]
rs2009721	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs2331693	1.00[CEU][hapmap];0.83[YRI][hapmap];0.83[EUR][1000 genomes]
rs2331696	0.81[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs2877461	1.00[CEU][hapmap];0.83[YRI][hapmap];0.83[EUR][1000 genomes]
rs3784113	1.00[CEU][hapmap];0.92[YRI][hapmap];0.83[EUR][1000 genomes]
rs3784115	1.00[CEU][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs3784119	0.81[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs3784120	0.81[JPT][hapmap]
rs3950069	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55665241	0.86[ASN][1000 genomes]
rs55749276	0.83[EUR][1000 genomes]
rs58339869	0.82[EUR][1000 genomes]
rs59993918	0.80[EUR][1000 genomes]
rs61039700	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61986906	0.81[EUR][1000 genomes]
rs61986910	0.82[EUR][1000 genomes]
rs7156527	0.82[YRI][hapmap]
rs8013236	0.81[CEU][hapmap]
rs8014025	0.88[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8014234	0.88[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8018477	1.00[CEU][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68844600-68858000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:68844600-68859200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:68845200-68858800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:68847600-68859000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr14:68847600-68862600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:68850200-68861000	Enhancers	Colon Smooth Muscle	Colon
7	chr14:68850800-68859000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr14:68851800-68858000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:68851800-68858400	Weak transcription	Fetal Intestine Large	intestine
10	chr14:68851800-68858800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr14:68851800-68859000	Weak transcription	Primary B cells from cord blood	blood
12	chr14:68851800-68859800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr14:68851800-68861000	Weak transcription	Stomach Mucosa	stomach
14	chr14:68852000-68858000	Weak transcription	Fetal Intestine Small	intestine
15	chr14:68852000-68858000	Weak transcription	Pancreas	Pancrea
16	chr14:68852000-68859000	Weak transcription	Left Ventricle	heart
17	chr14:68852000-68859000	Weak transcription	Right Ventricle	heart
18	chr14:68852000-68859400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr14:68852200-68858000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr14:68852200-68858200	Weak transcription	Placenta	Placenta
21	chr14:68852200-68859400	Weak transcription	Lung	lung
22	chr14:68852200-68864200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr14:68852400-68859000	Weak transcription	Right Atrium	heart
24	chr14:68852400-68862600	Enhancers	Fetal Stomach	stomach
25	chr14:68853600-68859000	Weak transcription	Fetal Thymus	thymus
26	chr14:68853600-68859600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr14:68853600-68861000	Weak transcription	Spleen	Spleen
28	chr14:68854000-68861400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr14:68854200-68861600	Weak transcription	A549	lung
30	chr14:68854400-68858000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:68854400-68858000	Weak transcription	NH-A	brain
32	chr14:68854400-68859000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr14:68854400-68859200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr14:68854400-68859400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr14:68854400-68863800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr14:68854600-68858000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr14:68854600-68858000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr14:68854600-68858000	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr14:68854600-68859000	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr14:68854600-68859000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr14:68854600-68859200	Weak transcription	GM12878-XiMat	blood
42	chr14:68854600-68859600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr14:68856400-68863000	Enhancers	Rectal Smooth Muscle	rectum
44	chr14:68856600-68865400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr14:68857000-68859800	Enhancers	NHDF-Ad	bronchial
46	chr14:68857000-68861400	Enhancers	Brain Anterior Caudate	brain
47	chr14:68857000-68861400	Enhancers	Brain Substantia Nigra	brain
48	chr14:68857000-68861400	Enhancers	Stomach Smooth Muscle	stomach
49	chr14:68857000-68862600	Enhancers	Adipose Nuclei	Adipose
50	chr14:68857000-68865800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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