Variant report

Variant	rs55665241
Chromosome Location	chr14:68866527-68866528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68863838..68866613-chr14:68869983..68873336,6	MCF-7	breast:
2	chr14:68859762..68864000-chr14:68864300..68866609,3	K562	blood:
3	chr14:68858725..68872867-chr14:69250734..69263104,36	MCF-7	breast:
4	chr14:68749573..68752589-chr14:68864032..68866537,3	MCF-7	breast:
5	chr14:68865212..68868859-chr14:68924955..68927209,3	MCF-7	breast:
6	chr14:68816741..68820574-chr14:68865040..68867633,3	MCF-7	breast:
7	chr14:68864311..68866713-chr14:68933323..68935955,2	MCF-7	breast:
8	chr14:68863146..68866898-chr14:68882756..68885018,4	MCF-7	breast:
9	chr14:68862766..68869873-chr14:69251663..69259874,10	MCF-7	breast:
10	chr14:68865781..68868150-chr14:69125911..69128521,2	MCF-7	breast:
11	chr14:68857574..68861262-chr14:68863734..68866586,4	K562	blood:
12	chr14:68773029..68777937-chr14:68858584..68866534,13	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1006816	0.89[ASN][1000 genomes]
rs10150212	0.90[ASN][1000 genomes]
rs11158735	0.88[ASN][1000 genomes]
rs11158736	0.89[ASN][1000 genomes]
rs11625452	0.96[ASN][1000 genomes]
rs12435046	0.96[ASN][1000 genomes]
rs17105586	0.80[EUR][1000 genomes]
rs1956536	0.90[ASN][1000 genomes]
rs1956537	0.90[ASN][1000 genomes]
rs2331696	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3784119	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3784120	0.89[ASN][1000 genomes]
rs61039700	0.85[ASN][1000 genomes]
rs8014025	0.96[ASN][1000 genomes]
rs8014234	0.95[ASN][1000 genomes]
rs8021199	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68859800-68871400	Weak transcription	Gastric	stomach
2	chr14:68861200-68869400	Weak transcription	Liver	Liver
3	chr14:68861800-68866800	Weak transcription	Psoas Muscle	Psoas
4	chr14:68861800-68871400	Weak transcription	Right Ventricle	heart
5	chr14:68862000-68866800	Weak transcription	Brain Angular Gyrus	brain
6	chr14:68862000-68870400	Weak transcription	Brain Substantia Nigra	brain
7	chr14:68862400-68868000	Weak transcription	Aorta	Aorta
8	chr14:68862600-68866600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr14:68862600-68869800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:68863600-68870000	Enhancers	Primary B cells from cord blood	blood
11	chr14:68863600-68877200	Enhancers	Primary B cells from peripheral blood	blood
12	chr14:68864000-68867200	Enhancers	Fetal Muscle Trunk	muscle
13	chr14:68864000-68867800	Enhancers	GM12878-XiMat	blood
14	chr14:68864400-68866600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr14:68864400-68866600	Weak transcription	Thymus	Thymus
16	chr14:68864400-68874400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr14:68864800-68871400	Weak transcription	Esophagus	oesophagus
18	chr14:68864800-68874200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr14:68864800-68878000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr14:68865000-68866600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr14:68865000-68866600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr14:68865000-68866600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:68865000-68866800	Weak transcription	HSMM	muscle
24	chr14:68865000-68867000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr14:68865000-68867800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr14:68865000-68868000	Weak transcription	Left Ventricle	heart
27	chr14:68865000-68868200	Weak transcription	Spleen	Spleen
28	chr14:68865000-68869000	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr14:68865000-68869400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr14:68865000-68869600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr14:68865000-68869600	Weak transcription	HUVEC	blood vessel
32	chr14:68865000-68872400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr14:68865000-68877000	Weak transcription	Pancreas	Pancrea
34	chr14:68865200-68866600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr14:68865200-68866600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr14:68865200-68866800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr14:68865200-68866800	Weak transcription	Brain Anterior Caudate	brain
38	chr14:68865200-68866800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr14:68865200-68866800	Weak transcription	NHLF	lung
40	chr14:68865200-68867000	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr14:68865200-68867000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr14:68865200-68867000	Weak transcription	A549	lung
43	chr14:68865200-68867200	Weak transcription	Fetal Heart	heart
44	chr14:68865200-68867200	Weak transcription	Fetal Kidney	kidney
45	chr14:68865200-68867200	Weak transcription	NHEK	skin
46	chr14:68865200-68867800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr14:68865200-68868000	Weak transcription	Right Atrium	heart
48	chr14:68865200-68869600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr14:68865200-68869600	Weak transcription	Lung	lung
50	chr14:68865200-68869600	Weak transcription	Rectal Mucosa Donor 31	rectum

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