Variant report

Variant	rs3784113
Chromosome Location	chr14:68835734-68835735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68834296..68836299-chr14:69281257..69283573,2	MCF-7	breast:
2	chr14:68833173..68835923-chr14:68849243..68851394,2	MCF-7	breast:
3	chr14:68830049..68833032-chr14:68833353..68836919,3	MCF-7	breast:
4	chr14:68833824..68836435-chr14:69255771..69258211,2	MCF-7	breast:
5	chr14:68834081..68836635-chr14:68840807..68842526,2	MCF-7	breast:
6	chr14:68834932..68837443-chr14:69252432..69254129,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11158732	0.89[CEU][hapmap]
rs11625452	0.85[CEU][hapmap]
rs11627490	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11628653	0.85[CEU][hapmap]
rs1885014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1977211	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2009721	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2025009	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2208396	0.91[EUR][1000 genomes]
rs2331693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2877461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3950069	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs55749276	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58339869	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59993918	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61039700	0.83[EUR][1000 genomes]
rs61986905	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61986906	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61986910	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013236	0.81[CEU][hapmap]
rs8014025	0.89[CEU][hapmap]
rs8014234	0.88[CEU][hapmap]
rs8018477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8021199	1.00[CEU][hapmap];0.92[YRI][hapmap];0.83[EUR][1000 genomes]
rs927221	0.86[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68829600-68837400	Enhancers	Primary hematopoietic stem cells	blood
2	chr14:68829600-68837400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr14:68829800-68837400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr14:68830200-68836200	Enhancers	Fetal Lung	lung
5	chr14:68830600-68836800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr14:68831000-68835800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:68831600-68836600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr14:68831800-68838400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr14:68831800-68841600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:68831800-68844200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:68832000-68836200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr14:68832000-68836600	Weak transcription	HSMMtube	muscle
13	chr14:68832000-68843200	Weak transcription	Placenta	Placenta
14	chr14:68832000-68843800	Weak transcription	Ovary	ovary
15	chr14:68832000-68844200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:68832000-68851600	Weak transcription	Lung	lung
17	chr14:68832200-68836000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:68832200-68836400	Weak transcription	Stomach Mucosa	stomach
19	chr14:68832200-68836600	Weak transcription	Fetal Intestine Large	intestine
20	chr14:68832200-68836600	Weak transcription	Fetal Intestine Small	intestine
21	chr14:68832200-68837000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr14:68832200-68838600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr14:68832200-68841600	Weak transcription	Pancreas	Pancrea
24	chr14:68832200-68844200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:68832200-68844200	Weak transcription	Brain Germinal Matrix	brain
26	chr14:68832600-68836400	Weak transcription	HUVEC	blood vessel
27	chr14:68833000-68845200	Enhancers	Primary B cells from peripheral blood	blood
28	chr14:68833200-68836200	Enhancers	Primary B cells from cord blood	blood
29	chr14:68833200-68837000	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr14:68833400-68838600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr14:68833600-68836800	Weak transcription	HepG2	liver
32	chr14:68833600-68837000	Weak transcription	Colon Smooth Muscle	Colon
33	chr14:68833600-68837000	Weak transcription	Esophagus	oesophagus
34	chr14:68833600-68842200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr14:68833800-68836800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr14:68833800-68838400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr14:68833800-68838800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:68834000-68835800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr14:68834000-68836000	Weak transcription	Brain Substantia Nigra	brain
40	chr14:68834000-68836800	Enhancers	Primary T cells from cord blood	blood
41	chr14:68834000-68838200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr14:68834000-68843400	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr14:68834200-68835800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr14:68834200-68837400	Enhancers	Fetal Thymus	thymus
45	chr14:68834400-68835800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr14:68834400-68835800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr14:68834400-68835800	Weak transcription	Psoas Muscle	Psoas
48	chr14:68834400-68836400	Weak transcription	Fetal Stomach	stomach
49	chr14:68834400-68837400	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr14:68834400-68837400	Enhancers	Adipose Nuclei	Adipose

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