Variant report

Variant	rs61986905
Chromosome Location	chr14:68820135-68820136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11627490	0.91[EUR][1000 genomes]
rs1885014	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1977211	0.90[EUR][1000 genomes]
rs2208396	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2331693	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2877461	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3784113	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3784115	0.92[EUR][1000 genomes]
rs3950069	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55749276	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs58339869	0.97[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs59993918	0.96[EUR][1000 genomes]
rs61039700	0.80[EUR][1000 genomes]
rs61986906	0.97[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs61986910	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7149637	0.83[EUR][1000 genomes]
rs8018477	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68811000-68829800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr14:68813600-68825600	Weak transcription	Primary B cells from cord blood	blood
3	chr14:68814200-68820400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:68816400-68826000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:68816400-68826200	Weak transcription	Pancreas	Pancrea
6	chr14:68816600-68825600	Weak transcription	Fetal Thymus	thymus
7	chr14:68816600-68826600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr14:68816800-68825000	Weak transcription	Aorta	Aorta
9	chr14:68817400-68824400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr14:68817400-68825000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:68817400-68826200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr14:68818400-68824400	Weak transcription	Fetal Kidney	kidney
13	chr14:68818600-68825600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:68819400-68820200	Enhancers	Fetal Muscle Leg	muscle
15	chr14:68819600-68820400	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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