Variant report

Variant	rs58339869
Chromosome Location	chr14:68829763-68829764
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68605282..68608015-chr14:68828516..68831935,3	MCF-7	breast:
2	chr14:68829073..68831953-chr14:68862651..68864586,2	MCF-7	breast:
3	chr14:68829763..68832771-chr14:68932528..68934610,3	MCF-7	breast:
4	chr14:68715271..68717103-chr14:68828305..68830296,2	MCF-7	breast:
5	chr14:68741974..68743530-chr14:68829514..68831281,2	MCF-7	breast:
6	chr14:68827778..68831796-chr14:69251511..69256304,4	MCF-7	breast:
7	chr14:68829028..68831413-chr14:69258975..69262628,4	MCF-7	breast:
8	chr14:68827902..68830472-chr14:68830504..68833278,2	MCF-7	breast:
9	chr14:68828824..68831409-chr14:69259339..69261614,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11627490	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1885014	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1977211	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2009721	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2025009	0.96[ASN][1000 genomes]
rs2208396	0.90[EUR][1000 genomes]
rs2331693	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2877461	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3784113	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3784115	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3950069	0.95[EUR][1000 genomes]
rs55749276	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59993918	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61039700	0.81[EUR][1000 genomes]
rs61986905	0.97[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs61986906	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61986910	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8018477	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8021199	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68811000-68829800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr14:68825600-68832000	Enhancers	Primary B cells from peripheral blood	blood
3	chr14:68825800-68830200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:68826200-68835400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr14:68826400-68830200	Weak transcription	Fetal Brain Male	brain
6	chr14:68826800-68830200	Weak transcription	Brain Germinal Matrix	brain
7	chr14:68826800-68830200	Weak transcription	Colonic Mucosa	Colon
8	chr14:68827000-68830200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:68827000-68830200	Weak transcription	Fetal Brain Female	brain
10	chr14:68827000-68831800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:68827200-68829800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr14:68827200-68830200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:68827200-68830200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:68827200-68830200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr14:68827200-68830200	Weak transcription	Placenta	Placenta
16	chr14:68827200-68830200	Weak transcription	Fetal Stomach	stomach
17	chr14:68827200-68830200	Weak transcription	Lung	lung
18	chr14:68827200-68830200	Weak transcription	Spleen	Spleen
19	chr14:68827200-68830400	Weak transcription	Fetal Kidney	kidney
20	chr14:68827200-68830600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr14:68827200-68831400	Weak transcription	Adipose Nuclei	Adipose
22	chr14:68827200-68831600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:68827200-68831600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr14:68827200-68831600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr14:68827200-68831800	Weak transcription	Gastric	stomach
26	chr14:68827200-68833000	Weak transcription	Psoas Muscle	Psoas
27	chr14:68827200-68833400	Weak transcription	Esophagus	oesophagus
28	chr14:68827200-68834200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr14:68827200-68834400	Weak transcription	Small Intestine	intestine
30	chr14:68827200-68834800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr14:68827400-68829800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:68827400-68830200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr14:68827400-68830200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr14:68827400-68830800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr14:68827400-68835000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr14:68827600-68830200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr14:68827600-68830400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr14:68827600-68830400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr14:68827600-68830600	Weak transcription	Aorta	Aorta
40	chr14:68827600-68831200	Weak transcription	Stomach Mucosa	stomach
41	chr14:68827800-68829800	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr14:68827800-68830200	Weak transcription	Brain Anterior Caudate	brain
43	chr14:68827800-68830200	Weak transcription	Brain Hippocampus Middle	brain
44	chr14:68827800-68830200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr14:68827800-68830400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr14:68828000-68830200	Weak transcription	Fetal Muscle Leg	muscle
47	chr14:68828000-68830200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr14:68828000-68830600	Weak transcription	Fetal Intestine Large	intestine
49	chr14:68828000-68830800	Weak transcription	HepG2	liver
50	chr14:68828000-68831400	Weak transcription	HSMM	muscle

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