Variant report

Variant	rs55749276
Chromosome Location	chr14:68840101-68840102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68831265..68833449-chr14:68839230..68840971,2	K562	blood:
2	chr14:68839948..68842055-chr14:68844186..68845983,2	MCF-7	breast:
3	chr14:68839158..68842071-chr14:69443455..69446162,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072110	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11627490	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1885014	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1977211	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2009721	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2025009	0.95[ASN][1000 genomes]
rs2208396	0.91[EUR][1000 genomes]
rs2331693	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2877461	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3784113	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3784115	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3950069	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58339869	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59993918	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61039700	0.83[EUR][1000 genomes]
rs61986905	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61986906	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61986910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8018477	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8021199	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68831800-68841600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:68831800-68844200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:68832000-68843200	Weak transcription	Placenta	Placenta
4	chr14:68832000-68843800	Weak transcription	Ovary	ovary
5	chr14:68832000-68844200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:68832000-68851600	Weak transcription	Lung	lung
7	chr14:68832200-68841600	Weak transcription	Pancreas	Pancrea
8	chr14:68832200-68844200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:68832200-68844200	Weak transcription	Brain Germinal Matrix	brain
10	chr14:68833000-68845200	Enhancers	Primary B cells from peripheral blood	blood
11	chr14:68833600-68842200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr14:68834000-68843400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr14:68834400-68841400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:68834400-68846400	Weak transcription	Fetal Heart	heart
15	chr14:68834600-68842200	Weak transcription	HSMM	muscle
16	chr14:68835000-68841600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:68835200-68840200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr14:68835200-68843600	Weak transcription	Brain Anterior Caudate	brain
19	chr14:68835600-68843800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr14:68836400-68840800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr14:68836400-68843200	Weak transcription	Spleen	Spleen
22	chr14:68836400-68847000	Weak transcription	Aorta	Aorta
23	chr14:68836600-68840800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr14:68836600-68840800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr14:68836600-68842000	Weak transcription	Thymus	Thymus
26	chr14:68836800-68840800	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr14:68836800-68843200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr14:68836800-68843800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr14:68837000-68840800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr14:68837000-68841400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr14:68837200-68840600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr14:68837200-68842400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr14:68837200-68843000	Weak transcription	Brain Substantia Nigra	brain
34	chr14:68837200-68843200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr14:68837400-68840600	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr14:68837400-68840600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr14:68837400-68840800	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr14:68837400-68841000	Weak transcription	Fetal Thymus	thymus
39	chr14:68837400-68841000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr14:68837400-68841800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr14:68837400-68842600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr14:68837400-68842600	Weak transcription	Fetal Stomach	stomach
43	chr14:68837400-68842800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr14:68837400-68843200	Weak transcription	Fetal Kidney	kidney
45	chr14:68837400-68843600	Weak transcription	Fetal Intestine Large	intestine
46	chr14:68837400-68843600	Weak transcription	Fetal Intestine Small	intestine
47	chr14:68837400-68844000	Weak transcription	Stomach Mucosa	stomach
48	chr14:68837600-68840800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr14:68837600-68841000	Weak transcription	Fetal Lung	lung
50	chr14:68838600-68840200	ZNF genes & repeats	GM12878-XiMat	blood

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