Variant report

Variant	rs4902661
Chromosome Location	chr14:69337181-69337182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10139065	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10139069	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10151103	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1274939	0.83[ASN][1000 genomes]
rs1274940	0.82[ASN][1000 genomes]
rs1274941	0.82[ASN][1000 genomes]
rs1274942	0.82[ASN][1000 genomes]
rs1274943	0.82[ASN][1000 genomes]
rs1274944	0.82[ASN][1000 genomes]
rs1475035	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1742493	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1742494	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1742495	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1742496	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1742498	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1742499	0.86[ASN][1000 genomes]
rs1742500	0.86[ASN][1000 genomes]
rs1742886	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1742890	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs393673	0.86[ASN][1000 genomes]
rs412638	0.86[ASN][1000 genomes]
rs41285480	0.88[ASN][1000 genomes]
rs424806	0.86[ASN][1000 genomes]
rs4312253	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs435205	0.86[ASN][1000 genomes]
rs440689	0.86[ASN][1000 genomes]
rs441983	0.85[ASN][1000 genomes]
rs445323	0.86[ASN][1000 genomes]
rs445863	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs453964	0.86[ASN][1000 genomes]
rs4902662	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987505	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6573861	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149334	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149376	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7149938	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149956	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7401911	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9788535	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035267	chr14:69230254-69348126	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv542123	chr14:69230254-69348126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69310800-69339800	Weak transcription	Right Ventricle	heart
2	chr14:69321200-69338000	Weak transcription	Gastric	stomach
3	chr14:69323800-69337800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:69324800-69338600	Weak transcription	HepG2	liver
5	chr14:69329600-69338200	Weak transcription	Pancreas	Pancrea
6	chr14:69330000-69338400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:69330000-69351000	Weak transcription	Fetal Heart	heart
8	chr14:69330200-69338000	Weak transcription	Hela-S3	cervix
9	chr14:69330200-69338200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:69330200-69348200	Weak transcription	K562	blood
11	chr14:69331200-69338200	Weak transcription	Colonic Mucosa	Colon
12	chr14:69331200-69350800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:69331400-69344600	Weak transcription	Brain Angular Gyrus	brain
14	chr14:69332600-69337400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:69332800-69337600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:69332800-69337600	Weak transcription	Fetal Intestine Small	intestine
17	chr14:69332800-69337600	Weak transcription	Fetal Stomach	stomach
18	chr14:69332800-69337800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr14:69332800-69337800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr14:69332800-69337800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr14:69332800-69337800	Weak transcription	A549	lung
22	chr14:69332800-69338000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:69332800-69338000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr14:69332800-69338000	Weak transcription	Liver	Liver
25	chr14:69332800-69338000	Weak transcription	HUVEC	blood vessel
26	chr14:69332800-69338000	Weak transcription	NHEK	skin
27	chr14:69332800-69338200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr14:69332800-69338200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr14:69332800-69338200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr14:69332800-69338200	Weak transcription	Esophagus	oesophagus
31	chr14:69332800-69338600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr14:69333000-69338200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr14:69333000-69338400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr14:69333200-69337400	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr14:69333200-69337600	Weak transcription	Aorta	Aorta
36	chr14:69333400-69337600	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr14:69333400-69337600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr14:69333400-69337800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr14:69334000-69337800	Weak transcription	NHDF-Ad	bronchial
40	chr14:69334000-69349600	Weak transcription	Fetal Kidney	kidney
41	chr14:69334000-69350800	Strong transcription	NH-A	brain
42	chr14:69334200-69337800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr14:69334200-69346400	Weak transcription	Stomach Mucosa	stomach
44	chr14:69334400-69337400	Weak transcription	Fetal Muscle Trunk	muscle
45	chr14:69334600-69337800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr14:69334800-69337400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr14:69334800-69338200	Weak transcription	Left Ventricle	heart
48	chr14:69335000-69337800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr14:69335000-69338000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr14:69335200-69337800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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