Variant report

Variant	rs61987505
Chromosome Location	chr14:69332302-69332303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69331683..69333924-chr14:69444602..69446357,2	MCF-7	breast:
2	chr14:69329871..69332801-chr14:69360773..69363561,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072110	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10139065	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10139069	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10151103	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1274939	0.90[ASN][1000 genomes]
rs1274940	0.89[ASN][1000 genomes]
rs1274941	0.89[ASN][1000 genomes]
rs1274942	0.89[ASN][1000 genomes]
rs1274943	0.89[ASN][1000 genomes]
rs1274944	0.89[ASN][1000 genomes]
rs1475034	0.80[EUR][1000 genomes]
rs1475035	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1742493	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1742494	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1742495	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1742496	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1742498	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1742499	0.93[ASN][1000 genomes]
rs1742500	0.93[ASN][1000 genomes]
rs1742886	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1742890	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs393673	0.93[ASN][1000 genomes]
rs412638	0.93[ASN][1000 genomes]
rs41285480	0.95[ASN][1000 genomes]
rs424806	0.93[ASN][1000 genomes]
rs4312253	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs435205	0.93[ASN][1000 genomes]
rs440689	0.93[ASN][1000 genomes]
rs441983	0.92[ASN][1000 genomes]
rs445323	0.93[ASN][1000 genomes]
rs445863	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs453964	0.93[ASN][1000 genomes]
rs4902661	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4902662	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4902663	0.80[ASN][1000 genomes]
rs6573861	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7149334	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7149376	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7149938	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7149956	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7401911	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9788535	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035267	chr14:69230254-69348126	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv542123	chr14:69230254-69348126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69310800-69336400	Weak transcription	NHLF	lung
2	chr14:69310800-69339800	Weak transcription	Right Ventricle	heart
3	chr14:69320600-69334400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:69321200-69338000	Weak transcription	Gastric	stomach
5	chr14:69322400-69336600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:69323800-69337800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr14:69324800-69338600	Weak transcription	HepG2	liver
8	chr14:69328000-69334000	Weak transcription	NH-A	brain
9	chr14:69328200-69336600	Weak transcription	HMEC	breast
10	chr14:69328800-69336200	Weak transcription	HSMM	muscle
11	chr14:69329600-69332400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:69329600-69338200	Weak transcription	Pancreas	Pancrea
13	chr14:69330000-69338400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:69330000-69351000	Weak transcription	Fetal Heart	heart
15	chr14:69330200-69332400	Weak transcription	HUVEC	blood vessel
16	chr14:69330200-69338000	Weak transcription	Hela-S3	cervix
17	chr14:69330200-69338200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr14:69330200-69348200	Weak transcription	K562	blood
19	chr14:69331000-69332400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr14:69331000-69332400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:69331000-69332800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr14:69331000-69332800	Strong transcription	HSMMtube	muscle
23	chr14:69331200-69332800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:69331200-69332800	Strong transcription	Osteobl	bone
25	chr14:69331200-69338200	Weak transcription	Colonic Mucosa	Colon
26	chr14:69331200-69350800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr14:69331400-69332800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
28	chr14:69331400-69344600	Weak transcription	Brain Angular Gyrus	brain
29	chr14:69331600-69332800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr14:69331800-69332600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:69331800-69332600	Weak transcription	Fetal Stomach	stomach
32	chr14:69331800-69332800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
33	chr14:69332000-69332600	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr14:69332000-69332800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
35	chr14:69332000-69332800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr14:69332000-69332800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr14:69332000-69332800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
38	chr14:69332200-69332800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr14:69332200-69332800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr14:69332200-69332800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr14:69332200-69332800	ZNF genes & repeats	Liver	Liver
42	chr14:69332200-69332800	ZNF genes & repeats	Fetal Intestine Small	intestine
43	chr14:69332200-69332800	ZNF genes & repeats	A549	lung
44	chr14:69332200-69332800	ZNF genes & repeats	NHEK	skin
45	chr14:69332200-69333200	ZNF genes & repeats	Aorta	Aorta
46	chr14:69332200-69333200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
47	chr14:69332200-69333400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr14:69332200-69333400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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